BtaINT0064439 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013072 | FUBP3
Description
Bos taurus far upstream element (FUSE) binding protein 3 (FUBP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101217]
Coordinates
chr11:100944914-100945908:+
Coord C1 exon
chr11:100944914-100945074
Coord A exon
chr11:100945075-100945834
Coord C2 exon
chr11:100945835-100945908
Length
760 bp
Sequences
Splice sites
5' ss Seq
GGCGTACGT
5' ss Score
6.5
3' ss Seq
TCCCCTCTGTGCCCTGACAGGGG
3' ss Score
10.32
Exon sequences
Seq C1 exon
GGGGCGAGAACATCAAGAGCATAAACCAGCAGTCGGGAGCACACGTGGAGCTTCAGCGGAACCCCCCTCCCAGCACTGACCCCAACCTGCGGATATTCACCATCCGGGGGCTCCCTCCGCAGATCGAGGTGGCCAGACACCTCATAGATGAGAAAGTCGGC
Seq A exon
GTACGTACGTGGGCCCTGCAGCCCGGCTCGGGAGTCGCGGGGGTTTCTTTTGTCTGTCCGAGGTACCTGCTTCCCCCCAGAACCTCACACTTCCCGGGCCTCTGGGTCCTCTGGTGATGCAAGGGCCGCGGCCCCCTCCCCCGGTGCCGAGGGGCAAGGTCATGGTGCAGGGACACGGGCCAGGCCCAGACGCGCAGGGCTCCCCTGGCCACCGCTGCTCAGGCCCGAGCCGCGGCCCCGCAGGCTAGAGGAGCAGCCGGGCGGCAGCCTCCCCCAGCTCTGTCCCCGGACCCCCACGGCCTCGCCCTGGCGGCCAGCCCCTCAGGCCAGCCCCTCAGGCAGCGTTCATTGACTCTGGCTTTAGTTTCAGGCGCCTCAAAGCAGATAAAGAAAGGGAGTGTTGATGGAGGACAGATGGGCCACTGCTCACCTCAGAGGGGCCGTAGAGTGGCAGAGAGAGCCGTGGGCCGGCCTAAGTTGACGGGAGAGTCCAGCAGGTTGGTCCCTCCCCCAGGGCGGCACGCCAGGGCAGGTGCGGTGGTGCAAGACTGGCGGCGTGGCGCATCGGCCACCGGAGGGGCAGCAGCCACCCCTGCAGTCAGGCCCTTCCGCGGGGAAGGAAGGCTAGTGAGTGCCGCAGGGTGCCTTTACCCCACGAGTCTCTGTCTTCCCGGAGACTGTGGCTCGTCCCGGGGCGGGCCTGGGCAGAGGGCACTGGTGCGGCCGGCGGGCAGTGAGAGTCCCCTCTGTGCCCTGACAG
Seq C2 exon
GGGACCAGTATTGGAGCTCCTGGACCCTTTGGACAGAGCCCCTTCAGCCAGCCGCCTGCCGCACCTCATCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013072:ENSBTAT00000017383:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.639 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(72.7=88.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCGAGAACATCAAGAGCAT
R:
TTTTGATGAGGTGCGGCAGG
Band lengths:
234-994
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development