HsaINT0066553 @ hg38
Intron Retention
Gene
ENSG00000107164 | FUBP3
Description
far upstream element binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr9:130630628-130631630:+
Coord C1 exon
chr9:130630628-130630788
Coord A exon
chr9:130630789-130631556
Coord C2 exon
chr9:130631557-130631630
Length
768 bp
Sequences
Splice sites
5' ss Seq
GGCGTACGT
5' ss Score
6.5
3' ss Seq
CTCCCTCTGTGCCCCCACAGGGG
3' ss Score
11.99
Exon sequences
Seq C1 exon
GGGGTGAGAACATCAAAAGCATCAACCAGCAGTCAGGGGCGCACGTGGAGCTTCAGAGGAACCCCCCTCCCAACAGCGACCCCAACCTGCGGAGATTCACCATCAGGGGGGTTCCCCAGCAGATCGAGGTGGCCAGGCAGCTCATAGATGAGAAAGTTGGC
Seq A exon
GTACGTACAGGGTCCTTCCCCCACCTGGTTTACTCATAGCTGTTTTCTTGTGGATGTCCAAGGTACCAGCTTTTCCCACCACCTTGTGCTGCTTGTGCCTGTGGGTTCTCACATCACACGAGGGCAAGCCCCCTCCTGCTTTGCCGAAGGGGAGGGTCGGAGACCCAGGGAGTGCCAGAGCCAGGCCCAGAAGCAATGAAGGAAGCCTGGCAGGACTCACCAAGGCCGCAGCAGCCGAGGCCCCAGAGCCGTTCCCCTGCGGGCTTAGATGAGCGGCTGGGGCGGCAGCCTCCCCCCACGCTGCCCCGGGACTCCGCTGGCATTGCCCTGGCGGCCAGCCCAGCAGGCAGCTTTCATTGACTCTGGCTTTAGTTTCAGGCACCTCAAGGCAGATAAAGAAAGGGAGTGTTGATGGAGGACAGATGGGCCACTGCTCACCTCAATGGGGACGTAGAATGGCAGAAAGAGCCTTGGGCCAGCCTAAGTTGACGGGAGAGTCAAGCAGGTTGGTCCCTACCCCCAGGGTGATGCCAGGGCAGTTGTGGTGGTGCCAGGACTGGCTGTGTGGTGGTATTGGTCGCTGGAGGGCAGAAGCCATTTCTGCAGCGCAGCCTGCTGTGGGAAGGAAGGCTAGTGTGAGTGCGTAGGTGTCCTTACTTCACTCGACTCCATCTCCCCAAAAGCTGGGCTTTGCCTCGGGGTGGGCCTGGGCAGAGGAAAGAGGTGTGCAACCAACAGCGGGTGAGAGCTCCCTCTGTGCCCCCACAG
Seq C2 exon
GGGACCAATCTCGGAGCACCTGGAGCCTTCGGACAGAGTCCATTCAGCCAGCCACCTGCCCCACCTCATCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107164:ENST00000319725:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.728 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(72.7=88.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTGAGAACATCAAAAGCA
R:
TTTTGATGAGGTGGGGCAGGT
Band lengths:
235-1003
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development