HsaINT0066553 @ hg19
Intron Retention
Gene
ENSG00000107164 | FUBP3
Description
far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:4005]
Coordinates
chr9:133506015-133507017:+
Coord C1 exon
chr9:133506015-133506175
Coord A exon
chr9:133506176-133506943
Coord C2 exon
chr9:133506944-133507017
Length
768 bp
Sequences
Splice sites
5' ss Seq
GGCGTACGT
5' ss Score
6.5
3' ss Seq
CTCCCTCTGTGCCCCCACAGGGG
3' ss Score
11.99
Exon sequences
Seq C1 exon
GGGGTGAGAACATCAAAAGCATCAACCAGCAGTCAGGGGCGCACGTGGAGCTTCAGAGGAACCCCCCTCCCAACAGCGACCCCAACCTGCGGAGATTCACCATCAGGGGGGTTCCCCAGCAGATCGAGGTGGCCAGGCAGCTCATAGATGAGAAAGTTGGC
Seq A exon
GTACGTACAGGGTCCTTCCCCCACCTGGTTTACTCATAGCTGTTTTCTTGTGGATGTCCAAGGTACCAGCTTTTCCCACCACCTTGTGCTGCTTGTGCCTGTGGGTTCTCACATCACACGAGGGCAAGCCCCCTCCTGCTTTGCCGAAGGGGAGGGTCGGAGACCCAGGGAGTGCCAGAGCCAGGCCCAGAAGCAATGAAGGAAGCCTGGCAGGACTCACCAAGGCCGCAGCAGCCGAGGCCCCAGAGCCGTTCCCCTGCGGGCTTAGATGAGCGGCTGGGGCGGCAGCCTCCCCCCACGCTGCCCCGGGACTCCGCTGGCATTGCCCTGGCGGCCAGCCCAGCAGGCAGCTTTCATTGACTCTGGCTTTAGTTTCAGGCACCTCAAGGCAGATAAAGAAAGGGAGTGTTGATGGAGGACAGATGGGCCACTGCTCACCTCAATGGGGACGTAGAATGGCAGAAAGAGCCTTGGGCCAGCCTAAGTTGACGGGAGAGTCAAGCAGGTTGGTCCCTACCCCCAGGGTGATGCCAGGGCAGTTGTGGTGGTGCCAGGACTGGCTGTGTGGTGGTATTGGTCGCTGGAGGGCAGAAGCCATTTCTGCAGCGCAGCCTGCTGTGGGAAGGAAGGCTAGTGTGAGTGCGTAGGTGTCCTTACTTCACTCGACTCCATCTCCCCAAAAGCTGGGCTTTGCCTCGGGGTGGGCCTGGGCAGAGGAAAGAGGTGTGCAACCAACAGCGGGTGAGAGCTCCCTCTGTGCCCCCACAG
Seq C2 exon
GGGACCAATCTCGGAGCACCTGGAGCCTTCGGACAGAGTCCATTCAGCCAGCCACCTGCCCCACCTCATCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107164-FUBP3:NM_003934:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.765 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(72.7=88.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTGAGAACATCAAAAGCA
R:
TTTTGATGAGGTGGGGCAGGT
Band lengths:
235-1003
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)