MmuINT0118758 @ mm9
Intron Retention
Gene
ENSMUSG00000026873 | Phf19
Description
PHD finger protein 19 [Source:MGI Symbol;Acc:MGI:1921266]
Coordinates
chr2:34752577-34753679:-
Coord C1 exon
chr2:34753594-34753679
Coord A exon
chr2:34752673-34753593
Coord C2 exon
chr2:34752577-34752672
Length
921 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CTCCTCTTCTCTCTTCTCAGTGG
3' ss Score
10.17
Exon sequences
Seq C1 exon
AGTGACTTCACCTCAGCCTGGAGCACAGACCACCACCTAGCCAGTATATTCGACTTCACACTGGATGAAATTCAGAGTTTAAAAAG
Seq A exon
GTACCTGCTATTCTAGAATTGACAGTAAGGGGGCGCTCTACGCCCCAGCATGAAGGAGGGACATCCTGAGGGTGTGGACACGCCCCTCATGGGCCTTCTGAAACTTCAGCTGAAAGGTCCGATATGCACAGGGCTGCCTGAAAATTTTGTACACTACAGCTTTCCACATACCGCCCTCTGCCCTCCAAAGCAGTGGTTCCGGCTGACTTGCCTGCAGTCCACCTCTCTAAACCCCTCCCTTGCCTCACATCTAAGACCAGAAGGTCTATGAATACGTACTGTCACTGTTTCACCCATGTTGATACTGAGTCCTCTTCCTGGAACACCCTGTGCCCTGCCCAGCCAAAAACTCAGAATATTGCTTCCTTCAGGAAGCCCTCTCAGATCCTCCCAAGCTGCCTTGGGAGCCTGCTTCTATCTGCTCACATGGATATGAAGTACCCCTATTTGAGTATTTGAAGGGCAAGAATTTCATCTTTTACCACTTGACTCCTGAAATCACTGAAGACCACGCTGTGTTGGTCATGGATCGGGAAGGGGAGGGATTTAGAGCCAGATGGGAGCTCTGGGCTATGCTTACCAGTTCTTACTTTGCAGCGTTAGCCGACTTCCTTAATCACCCAACCGCCTCATTTCCCCCAGTTTGAATCCATGAAACTTTGTACGACTGCCCACTGGCTCGTGGACCGTGTCACCGGCGTGTCCGCTGCCACAGGAGATTGGTCTGGGAAAGTTTTCTTGACAGTCGGCTCTGATGACTGAATGGTGAAAAAGCAGGACAGATGGACATAGGGTGAAAATCTTTGGCAGTGAGGAGACTGGCCCTGCTGAGATGGAGGATGCCATGTCAGAGACGGAAGGTGGAGAAGCTCCTCAGTGCTGGGCCAGGCCAATAGCAGGGCTCCTCTTCTCTCTTCTCAG
Seq C2 exon
TGGCAGCTCAGGCCAGACCTTCTTCTCAGATGTGGATTCTACCGACGCAGCCAGCACCTCGGGGTCTGCCTCCACCAGCCTCTCCTACGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026873-Phf19:NM_028716:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.394
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: