GgaINT1021402 @ galGal4
Intron Retention
Gene
ENSGALG00000001595 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr17:8289080-8289337:-
Coord C1 exon
chr17:8289252-8289337
Coord A exon
chr17:8289176-8289251
Coord C2 exon
chr17:8289080-8289175
Length
76 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CGACGCTGCCTCCATCCCAGCGC
3' ss Score
5.05
Exon sequences
Seq C1 exon
AGCGACTTCACCTCGGCCTGGAGCACCAACCACCACCTGGCCAGCATCTTCGACTTCACACTGGATGAGATTCAGAGCCTGAAGAG
Seq A exon
GTGAGTGCTGCCCAGCCGCGGTGCTGGGGGAGCTCTGAGGTGTGGGGCCGCGGGGCCGACGCTGCCTCCATCCCAG
Seq C2 exon
CGCCAGCTCGGGGCAGACCTTCCTCTCCGACGTGGACTCCACGGATGCCGTCAGCACCTCAGGCTCAGCCACCACCAGCCTGTCCTGCGAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001595:ENSGALT00000002421:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.788
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCACCTCGGCCTGGAG
R:
AGGACAGGCTGGTGGTGG
Band lengths:
169-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]