BtaINT0110735 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016958 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr8:112144949-112146049:-
Coord C1 exon
chr8:112145964-112146049
Coord A exon
chr8:112145045-112145963
Coord C2 exon
chr8:112144949-112145044
Length
919 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TCACCCCTCCTCCCCCTCAGCGC
3' ss Score
9.45
Exon sequences
Seq C1 exon
AGCGACTTCACCTCCGCTTGGAGCACCAATCACCACCTGGCCAGCATATTTGACTTCACACTGGACGAGATCCAGAGTTTAAAAAG
Seq A exon
GTAACAGTGAGGGGCCCGGCAGAGAGGGCTGCTCTGGCTGGAGACGGGAATAGAACTGAGCAGGGAGACAGATGCCCCCTGTTCCCCCAGCCCTGCAGGGGGCGAAACACAGAGCCTTGGAGGATGGAGACACTCTCCTGGGGTCGCTGAGTTAAAGGCTCTGCACTGCAGAAGGCTGCCGGAAGGGTCTTTCTGCATCAGGGCTTTCAGCCTCACACCTCGCCCCCACCCCCGGAGGCCTGTGGGGCTCCCGGGGATAGCCCCCAGAGCCCAGCCCTCCCTACACCTCCTGCCCCCCTCTCCCCACTGCTTCACACCTGGCACCAGACTTGCTGTGGTCACCCCACATTCACGGTCCTCTGCGGAGCCGCCCCTGACCCTCCCCGGGCCCTGGCGGATGCTCCCTCTGCCCCACGGCACCTCGTCCTCGGTGCCCCTATGGGTGGGGCCGCATCCAGCAGTTTTATTCTCCTGACTATTGAAGGTTATCTCGGGCTCTCCTGTAGGCACGAAGGAGGGGGCAAGGACTTCGGTCAATGAGGCCTGGGCCCCAGCCCCTACTTGCCAGCTGCCAGCTGTGTGACTTTGGCAAAGTTCTCTAACCTCCCTGAGCCTCCTCCGTGGCTGCTGCTTGGCTGTTAGGAGACTCAGAACCCTCTTTATCGTCTCTCGTTGTCACAGTGCTGTGTCGCCGACCGGGGAGGTGGTCAGGGAAGGCCTCTGTGGCCTCCGGGGCTTTGAAGGCTTGGTGGGCAGCCAGTGGATGGGGGAGGAGGCGCACCTGCCGCTGTGGTGTCGGGCAGCTCGGGGCGAAGGGGCTCGGCTGAGAGGAAGGGTGCCAGGCAGAGGGGCCAGAGATGCCCAGGAAAGCCCTGGGGCACTGAGGGCTGGCCGTAGGCTCACCCCTCCTCCCCCTCAG
Seq C2 exon
CGCCAGCTCAGGCCAGACCTTCTTCTCGGACGTGGACTCCACCGATGCCGCCAGCACCTCTGGCTCTGCTTCCACCAGCCTCTCCTACGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016958:ENSBTAT00000022557:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.545
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]