RnoINT0110354 @ rn6
Intron Retention
Gene
ENSRNOG00000018874 | Phf19
Description
PHD finger protein 19 [Source:RGD Symbol;Acc:1310390]
Coordinates
chr3:13960617-13961655:-
Coord C1 exon
chr3:13961570-13961655
Coord A exon
chr3:13960713-13961569
Coord C2 exon
chr3:13960617-13960712
Length
857 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CTTCTCTTCCCCCCTCTCAGTGG
3' ss Score
9.24
Exon sequences
Seq C1 exon
AGTGACTTCACCTCAGCCTGGAGCACGGACCACCACCTGGCCAGCATATTCGACTTTACACTGGATGAAATTCAGAGTTTAAAAAG
Seq A exon
GTACCTGCTATTCCAGAACTGACAGTAAGGAGGGGCTCTACTCCCCAGCATGAAGGACACGCCCCTCATGGACCTTCTGAAACTTCAGCTGAAAGGTTCTATATGCACAGGGCTGCCTGAGAATTTTATTCACTACAGCTTGTGGCATAACACCCTCTGCCCCACAAAAGCAGTGGTCTGGGCTGACTTGCCTGCAGACCTGCCACTCCCCTGCCTCACATCTAAGACCGGAAGGGCTATGGCCATCCTGTTCTGTGTTTATACTAAGCCCTCTTCCTGAACCACCCTGTGCCCTGCCCTCCCCGAGCCAAAAACTCAGAATATTGCTCCGGGAAGCCCTCGTGGATCCTCCCAGCTGTGTTGGAAAACTGCTGTATCTGCTCATATGAATATGAAATCGTCACATTTGGGTATTTGAGGGGCAAGAATGTCATCTTTTATCATTCGACTCTCGAAGACAACTCTGTTTTGGTCCCGGATCAGGAAGGGGAGGGATTTAGAGTCAGATGGGAGCTCTAGGCCATGCTCGCCAGTTCTAACCCTGCAGCATTAGCTGACTTCCTTAATCGCCCAACCGCCCCGTTTCCCCCGCTTTGAGTCCGTGGAATTTTGTACAACTGCCCATTGGCTCATGGACCGTGTCACCAACCGGCATGCCCATGGCCACAGGAGAGTGGTCTGGGACAGTTTTCTTGACTCTCAGCTTTGAAGACTACATGGTAGAAAACAAGACAGACGGATGCAGGGTGGAAATCTTGGCAGTGAGGAGATGGGCTGGCCTGTCAGAGACACTGAAGGTGGAGAGGCTCCATAGTGCTGGGCCAGGCCAATAACAGGCTTCTCTTCCCCCCTCTCAG
Seq C2 exon
TGGCAGCTCAGGCCAGACCTTCTTCTCAGACGTGGATTCTACCGATGCTGCTAGCACCTCAGGCTCTGCGTCCACCAGCCTCTCCCAGGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018874:ENSRNOT00000025528:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]