MmuINT0051762 @ mm9
Intron Retention
Gene
ENSMUSG00000026825 | Dnm1
Description
dynamin 1 [Source:MGI Symbol;Acc:MGI:107384]
Coordinates
chr2:32190202-32191363:-
Coord C1 exon
chr2:32191296-32191363
Coord A exon
chr2:32190341-32191295
Coord C2 exon
chr2:32190202-32190340
Length
955 bp
Sequences
Splice sites
5' ss Seq
CAGGCATGT
5' ss Score
2.05
3' ss Seq
CTCCTGCTCCGGGCGTTCAGAAC
3' ss Score
4.79
Exon sequences
Seq C1 exon
ATGGAGTTTGATGAGAAGGAACTGCGAAGGGAGATCAGCTATGCTATCAAAAATATCCATGGCATCAG
Seq A exon
GCATGTACTGGGACCAGGGTGGGCTCTGCACGGGGCAAAGGGGCACGGGGCCTGAAGGAGCCTCTCGCAAGAAGGACCTGAGAGTCCTGGTCTTCAATCCCCTCAACCCCCCCCCCAACTTTCTGGCTCCTCAAACAACAGGCTCCAGCTAAGGGAGGTGGCTGGGGGGCCTGGGTTCCCGACAGCCTGCAATGCACTCTATAGGGATGGGTGCAGCTATCCCTAGGGCGCAACAACTCTGCCCAGTGCCGTCCAAGTAGCCAAGCAAAGGGTAGGGTTGCTGGGTGGGGCCTAGGGCATAGCACCCAGATATCATTCTAAATTGCTTTATGAGGGGAGTTTTCTACTTGTCAGACCCTCCCCCAGCTCCTGTTAGCTCTGCCTCCCCTATTTTACCCACTCCCCTCCTAAGCCACCCCGTGGTGGAGAAAGGAGAGCTGAGAGATAGAGCCTGTTGCTTAGACACCACCCTCCCCTGGGGTGGAGAACCCAGACTCTGACTGGCACTATGCCCATCTAACACCTATGTGAACAAGACAGAAGAGCCCTGTGCTCCTCCTGTAGGCTTCATGCTATGTCTTGACATGAAGTTTACAGTTTGACAAGTGAGTTGGCCTGGTAGGAAGATCTCGTCTCCTAGTCTTAACAAAAAGCTTGGTTCTCAGAACGGCTCTTAAGGAGGCCTCGGTTCAGCAATTTCCAGAGTTTGGGGATATAGAACCTTTCACAGCAACACTTAAGAGGAAGCAAAAGGTACACAGGAGAGTCTCAAGCAGAGTGGTGTGGCCCAAGGATCACCAACCCATTGACTAGATGGGGACACTGAGGCTCAGAAAGGGTAGTGGGAGGACTCTTCCCCCAGGCACAGCCAGGAGCTGGCGAGGGACCCTAGCCTGGCCCTCCTGGCAAGTGCCAGCCTGTGACACTGTGCCCTTCTCCTGCTCCGGGCGTTCAG
Seq C2 exon
AACGGGGCTCTTTACCCCAGACATGGCCTTTGAAACCATTGTGAAAAAGCAGGTGAAGAAGATTCGAGAGCCGTGTCTCAAGTGTGTGGACATGGTTATCTCGGAGCTAATCAGCACGGTTAGACAGTGCACCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026825-Dnm1:NM_010065:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.4=100)
A:
NA
C2:
PF0103115=Dynamin_M=FE(15.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGTTTGATGAGAAGGAACTGC
R:
TTCTTGGTGCACTGTCTAACCG
Band lengths:
206-1161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: