BtaINT0051320 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011307 | DNM1
Description
Bos taurus dynamin 1 (DNM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076820]
Coordinates
chr11:98851939-98854998:+
Coord C1 exon
chr11:98851939-98852006
Coord A exon
chr11:98852007-98854859
Coord C2 exon
chr11:98854860-98854998
Length
2853 bp
Sequences
Splice sites
5' ss Seq
TAGGCACGT
5' ss Score
0.42
3' ss Seq
CCTCCTCCTCCCGGGTGCAGGAC
3' ss Score
10.04
Exon sequences
Seq C1 exon
ATGGAGTTTGACGAGAAGGAACTCCGAAGGGAGATCAGCTATGCCATCAAGAATATCCATGGCATTAG
Seq A exon
GCACGTATGGGGACTGGGGAGGGAAGCCGAACCCTGGAAGGCAGAAAGGGTCTAGCGCAGAGGTAGAGGGAGTGATGGAGTGAGCTCCCCTCGGGAAGGATGAAGAGCCCTAGTGCTCAGTCTCCTCAACCCCGACTTTCCGGCTTCCAACTTGGACAGGCTCTGGCGAGGGGCACTGGATAGGAGACCCGGGCTACCCCAATACCTGCCGCCTGCTGCCTGCCTTTGCCTGTTCCTGGGCACAAGGCTTGGCGGCTAGACTAGTTGGGTACAGCCCAAGGTACAGGTGGCAGGGGCAGCACCCTCTGGGCTTGGGTCCCCTGCCCATCCCCAAGGTGAGACAGCTCCCATCAGTCGTCTCCAGCACAAAGTTGCCCAAACCAATGGGTAGGGCCTGAGATAGGCTACCACGTGTTGGTCTGTGAACCTTTTGTGATGGAATGAGGCCTCTCAACCCTCCAGACCCTCCCATGATCCTGTTAACCCAAAGTTGGCCCCATTCCGCCCCACTTCCCTCCTTCCAGTCAACACCAAGGCCAGTAGAGCAGGAAGGAAGACTGGGAAATAGACCAGTCCTTAAAATCTTAGCCTCTGCTCCAGGGATCCAGAGCTACACTGGTCCTTCAACAAGAAAATTTAAAACACCCGCTATGTGCCTAGGCAGTGAACCAGACCAAAATGTCACTGCTTTAATGCAGGTTCCATTCCAAGGTTTGGCATGAATTTACAGACTGCATTGGCTAAGGCACAGGAAAAAAAAAATCTCTCTCCTAGTCTTAAAATAAAATGCTTTCTTCCCAGTAAGGCTCTCAGAGACAACCCAGTTCAGCAGTTTTCAAACCATTTCTAGCCACAGAACCTTTTGTAGGAACAGAATCTGAAGACAAAACAGGACATATGCACCAACTATAAGCAGACCTTACCCTGAAAAGCATCAATTGAAAGACCTTCATTAGAGTCCCTCCTGCCCATTTTACAGATGGGAACACTGAAGCCCAGAGAGGGGTAGTGGGAGGACCCCGAGGGCAGAGCTCAGGGGGTCGGGATGGGGCCCTGGCCTGGTACTCCTGGCAGGAGCTGGCCTGTGACACTGTGCCCTTCTCCTGCTCCGGGCATTCAGAACCGGGCTCTTTACCCCAGACATGGCCTTTGAGACCATTGTGAAAAAGCAGGTGAAGAAGATCCGAGAACCTTGTCTCAAGTGTGTGGACATGGTTATCTCGGAGCTAATCAGCACCGTTAGACAGTGCACCAAGAAGGTAACTGGCGCCCGGCCAGCCCCTCCCACCTCTGCCCCGCCCTGCTCTGCTGCCAGGCGCTCCTTCCCCACCCCACCCCACTGCCCCCTAGTAGCATGTACAGACCTCAGCGGGGCGGGGGAGGCAGGCCACCGCAGTCCAGGAGAGCGGGACTCTCTGAGGGGGCCTCAACCAGCCCTGGCCCCCAGGCTGGGGGGAACAAGGGATTAGACATTGGAAAGACAGATATGGCAGTGGTTATTTGCTCCGAGAGCCCACCAAGAGCTCCCCCAGCTCAGGGAGAAGAAGGGACTCAGTCCCCTTCCTGCTCCCAGAGGTGGAGTCATCTTTGGGGTCTCCAGGGAGGGGTCTCAGGGAAGTCTTGGCCCTGGAGACAGAAGAGGTACAGGACCTTCTTGGGTGCCGCCCAAGGGGCCTGGACAGCCAGAGGGATCCAGAGGACCCAGGTCAAGCAGGTACCCCAACTCCCTACCGTCCTTCATCTTCCCCATCTCACCCCCACCCTCACTCAGGACCCTCACTCAGGACCTTCCCTGTCCCTTCCATCCACATCCAGACTTCCAGGGACAGAATCCTCCTCCATCTGCCTCACAGAACCACTCAAGGAGGGCAGGGCAGGGCAGGGAAGATGGTACCCATTTCACAGCAGGAAGACTGAGGCTCGGGAGATCAAGTGACTTGCCCAAGGTCATGTGAGCTCAGAGGTGGCAGAGCTATAACTCCGAGCCAAGGCTTTGGACTCCACCCCCTAGCCTCCCTTCCTCTCCCCTCCCCACAGCTGTCCTGGCCCCTCTCTATCACCATCTTCACTCTTTTCTGTCTTTCCTCTTCTCTCTGTCTTTCCAAACTGAGCTCCTCCAGACTCCACTGGAGGAGAGGCACAGGATGCCCCTTGAGGAGAAAGGGAAGGGCCGGAGTAGAGCAGGAAATAGAGAATGGAGACCAGGCAGCTACACACAACTCTGGGAGGCGTCCTCTACCCCACAGTCTAGTAAATGGCGCCCCCTGGAGTTGTGCAGTGCACCGCCTGGGCAGCGGGCTGCCACGACCTTGGCAAATAGGGAATGGTGCTGGGCTTTGGAGGCGGGACGAAGCAAACACAGGAGGTTCTGGGAAACCTAGCATTGACCAGAATGGAGGTGAGTGGAGTCCGGGCCTGGGTCAGCTCCTCAGCAGGACCCCGGGCTGTGACAAAGACAGCGCTGGAAAAGAGAGAGGGGGCAGGCTTCAGGGTAGCTGAAGAGTCGCGGAGCCAAGCCCTGGGAAAGAATATGAACTCAGTAAGGGCCCTTGGATGGTGCCGGGGCTTGGTCCCTCGCACCCCTCCCATGCCCTCAGAGCCCTGGAGGGGGGGTGCAGCACTTGGCAACACCCGGGAGGTGCCAGTCTGGGTGGTAACAGGAGGGCCAGGCCCAGCGCTCACATTGTCTTCTCTCCTCTCTCTCTTTCTCTGTGTTGGTGTCTCTCTTCCCTCGTGCCCCTGCCATCCTCCACCCTGCACCCTGGCTCCGCTTGGCCTTCACTCCCCTCCACCTCCTCGCCCTCCCACCCCTGGCTGCACCCCGTCCTGCCCCCCTCCTCCTCCCGGGTGCAG
Seq C2 exon
GACGGGCCTCTTCACACCTGACCTCGCTTTTGAAGCCACAGTGAAAAAGCAGGTGCAGAAGCTTAAAGAGCCCAGTATCAAGTGTGTGGATATGGTAGTCAGTGAGCTCACGGCCACCATCAGAAAGTGTAGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011307:ENSBTAT00000032743:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.4=100)
A:
NA
C2:
PF0103115=Dynamin_M=FE(15.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development