MmuEX0031342 @ mm9
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52016176-52017692:-
Coord C1 exon
chr2:52017588-52017692
Coord A exon
chr2:52016891-52016995
Coord C2 exon
chr2:52016176-52016268
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATTTTACTCTTTCTTTATAGCTT
3' ss Score
9.64
5' ss Seq
TCGGTACAT
5' ss Score
4.33
Exon sequences
Seq C1 exon
AAAAAGTACAAGGAAGATGCAGAGAAGTCCATGTCATATTATGAGACTGTCTTGGACACGCCAGAGATGCAAAGAGTCCGCGAGAACCAGAAGAACTTCAGCCTG
Seq A exon
CTTCAATACCAGTGTGACCTTAAAAACAGTAAAGGGAAAATTACAGTTGTTCAAGACACGCCAGAAATACTGCGTGTTAAAGAAAACCAAAAGAATTTCAGCTCG
Seq C2 exon
GTTTTATATAAAGAGGATGTATCCCCGGGGACGGCAATTGGAAAGACGCCTGAGATGCTCAGAGTGAAGCAAACGCAGGACCACATTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.449 A=0.114 C2=0.564
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(66.7=45.7)
C2:
PF0088013=Nebulin=PD(25.0=19.4),PF0088013=Nebulin=PU(61.5=51.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTACAAGGAAGATGCAGAGAAGT
R:
GAGCTAATGTGGTCCTGCGTT
Band lengths:
194-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: