RnoEX0059014 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37678278-37679800:-
Coord C1 exon
chr3:37679696-37679800
Coord A exon
chr3:37678992-37679096
Coord C2 exon
chr3:37678278-37678370
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCTTTACTCTTTTTTCATAGCTT
3' ss Score
8.29
5' ss Seq
TCGGTATAT
5' ss Score
4.42
Exon sequences
Seq C1 exon
AAAAAGTACAAGGAAGATGCAGAGAAGTCCATGTCATATTACGAGACTGTCTTGGATACCCCAGAGATGCAAAGAGTCCGTGAGAACCAGAAGAACTTCAGCCTC
Seq A exon
CTTCAATACCAGTGTGACCTTAAAAACAGTAAGGGGAAAATTACAGTGGTCCAAGACACGCCAGAAATACTGCGTGTTAAAGAAAACCAAAAGAATTTCAGCTCG
Seq C2 exon
GTTTTATATAAAGAGGATGTGTCCCCGGGAACAGCAATCGGAAAGACTCCGGAGATGCTCAGGGTGAAGCAAACTCAGGACCACATTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.057 C2=0.581
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(66.7=45.7)
C2:
PF0088013=Nebulin=PD(25.0=19.4),PF0088013=Nebulin=PU(61.5=51.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACAAGGAAGATGCAGAGAAGT
R:
CGAGCTAATGTGGTCCTGAGT
Band lengths:
194-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]