GgaEX1002804 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36820366-36822121:-
Coord C1 exon
chr7:36822017-36822121
Coord A exon
chr7:36821283-36821387
Coord C2 exon
chr7:36820366-36820458
Length
105 bp
Sequences
Splice sites
3' ss Seq
TACTACAACTTTTTCAACAGCTT
3' ss Score
5.88
5' ss Seq
TCGGTACAG
5' ss Score
3.7
Exon sequences
Seq C1 exon
AAAAAGTACAAGGAAGAGGCAGAAAAGACCATGCCATACTATGTGCCTGTAGCAGACACACCAGAAATGCAGAGAGTCCGTGAGAATCAAAAGAACTTCAGCACG
Seq A exon
CTTCAGTATCAGTGGGACCTACAGAACAGTAAAGGGAAAGTTACAGTTGTACAAGATACACCAGAAATGCTGCGTGTGAAAGAGAACCAGAAGAATTTCAGCTCG
Seq C2 exon
ATTTTGTATAAAGAAGATATTGGAACTGGAACTACTATTGAAAAGACGCCAGAGATGCAGAGAGTTAAAAGAACCCAGGATGCAATTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'137-137,'137-136,138-137=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=0.257 C2=0.645
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(66.7=45.7)
C2:
PF0088013=Nebulin=PD(25.0=19.4),PF0088013=Nebulin=PU(59.3=51.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACAAGGAAGAGGCAGAAAAGAC
R:
CGAGCTAATTGCATCCTGGGT
Band lengths:
194-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]