BtaEX0024187 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44734628-44736046:+
Coord C1 exon
chr2:44734628-44734732
Coord A exon
chr2:44735247-44735351
Coord C2 exon
chr2:44735954-44736046
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGTTTACTCTTTTTTCATAGCTC
3' ss Score
8.23
5' ss Seq
TCGGTATAT
5' ss Score
4.42
Exon sequences
Seq C1 exon
AAAAAGTACAAGGAAGATGCAGAGAAGTGCATGTCATATTATGAGACCGTTTTGGACACCCCAGAGATGCAGAGGGTCCGGGAGAACCAAAAGAACTTCAGCCTT
Seq A exon
CTCCAATACCAGTATGACCTTAAAAACAGTAAAGGAAAAATTACAGTTGTTCAAGACACGCCAGAAATACTGCGTGTAAAAGAAAATCAAAAGAATTTCAGCTCG
Seq C2 exon
GTTTTATATAAAGAGGATGTCTCACCAGGAACAGCAATTGGAAAGACACCTGAGATGATGAGAGTGAAGCAAACCCAGGACCACATTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907_MULTIEX6-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.057 C2=0.613
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(30.8=22.9),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(66.7=45.7)
C2:
PF0088013=Nebulin=PD(25.0=19.4),PF0088013=Nebulin=PU(69.6=51.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACAAGGAAGATGCAGAGAAGTG
R:
CGAGCTAATGTGGTCCTGGGT
Band lengths:
194-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development