DreEX0050003 @ danRer10
Exon Skipping
Gene
ENSDARG00000032630 | neb
Description
nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
Coordinates
chr9:23000931-23007800:-
Coord C1 exon
chr9:23007696-23007800
Coord A exon
chr9:23007266-23007370
Coord C2 exon
chr9:23000931-23001038
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTGTGCTCTTTTCTTTTTAGCTT
3' ss Score
10.9
5' ss Seq
TCGGTACCT
5' ss Score
4.27
Exon sequences
Seq C1 exon
AAAAAATACAAGGAGGAGGCTGAGAAGACCATGTCTCACTATGTGCCTGTCCTGGACACCCCAGAAATGCAAAGAGTGCGTGAGAACCAGAAGAACTTCAGCACT
Seq A exon
CTTCAGTACCAGATTGACCTTAAAAAGAGTAAGGGCAAAGTTTCAGCAGTACAGAACACCCCTGAAATGCTTCGTGTTAAAGAAAATACAAAGAATTTCAGCTCG
Seq C2 exon
GTTTTGTACTCTGACAGCTTCCGTAAGCAGGTGCAAGGAAAGGCCGCCTTTGTGCTGGACACCCCCGAGATGAGACGCGTCAAAGAAACCCAGCGTATCATTTCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032630_MULTIEX1-11/13=10-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=0.350 C2=0.106
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(41.4=33.3),PF0088013=Nebulin=PU(64.0=44.4)
A:
PF0088013=Nebulin=PD(41.4=33.3),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Inclusion Isoform:
ENSDART00000142585fB4197
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATACAAGGAGGAGGCTGAGA
R:
TCCAGAAATGATACGCTGGGT
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]