DreEX0049987 @ danRer10
Exon Skipping
Gene
ENSDARG00000032630 | neb
Description
nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
Coordinates
chr9:23001411-23003248:-
Coord C1 exon
chr9:23003156-23003248
Coord A exon
chr9:23001933-23002025
Coord C2 exon
chr9:23001411-23001503
Length
93 bp
Sequences
Splice sites
3' ss Seq
AAATCAATCCTTGGGTATAGATA
3' ss Score
3.05
5' ss Seq
TCGGTAGTG
5' ss Score
1.01
Exon sequences
Seq C1 exon
ATTCATTACAAAGAAGATTTGGGAGGAGGAACGGCTATTTCAGAAACCCCAGAGATGGAGAGAGTTAAACGAAATCAGCAAAATATTAGCACG
Seq A exon
ATAAAATACAGGGATTCGCTGGGTCAAGGCACAGCTATGCCGGACCTCCCTGAGATGAAGCGGGTCAAAGAGAATCAGAAGCACATCAGCTCG
Seq C2 exon
GTGTTGTATAAGGATCTGTCGGCCAAGGGAACGCCTGTGGTGTTCACTCCAGAGATGGAGCGGGTCAAACGGAACCAATTGCACATTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032630-'146-155,'146-154,147-155
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.544 A=0.581 C2=0.183
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(72.7=51.6)
A:
PF0088013=Nebulin=PU(72.7=51.6)
C2:
PF0088013=Nebulin=PD(18.2=12.9),PF0088013=Nebulin=PU(55.2=51.6)
Main Inclusion Isoform:
ENSDART00000143888fB4193
Main Skipping Isoform:
ENSDART00000143888fB4198
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGGGAGGAGGAACGGCTA
R:
GCTAATGTGCAATTGGTTCCGT
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]