RnoEX0059005 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37667235-37669426:-
Coord C1 exon
chr3:37669334-37669426
Coord A exon
chr3:37667638-37667730
Coord C2 exon
chr3:37667235-37667327
Length
93 bp
Sequences
Splice sites
3' ss Seq
GGATCCACTGACTCATTTAGGTT
3' ss Score
4.58
5' ss Seq
TCGGTATTG
5' ss Score
3.83
Exon sequences
Seq C1 exon
GTGCTATATAAAGAAAACATGGGCAAGGGAACCCCTTTACCTGTCACTCCAGAGATGGAGAGAGTCAAACACAATCAAGAAAATATTAGCTCG
Seq A exon
GTTTTGTACAAAGAAAATGTGGGTAAAGCCACCCCAACCCCTGTCACTCCAGAGATGCAGAGAGTCAAACGCAATCAAGAAAACATTAGCTCG
Seq C2 exon
GTGCTATACAAAGAGAACCTGGGGAAAGCAACCCCCACACCCTTCACTCCTGAGATGGAAAGAGTCAAACGCAATCAAGAAAACTTTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'158-169,'158-168,159-169
Average complexity
C2
Mappability confidence:
62%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.968
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(35.7=32.3),PF0088013=Nebulin=PU(57.1=51.6)
A:
PF0088013=Nebulin=PD(35.7=32.3),PF0088013=Nebulin=PU(55.2=51.6)
C2:
PF0088013=Nebulin=PD(37.9=35.5),PF0088013=Nebulin=PU(55.2=51.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAACATGGGCAAGGGAAC
R:
CGAGCTAAAGTTTTCTTGATTGCGT
Band lengths:
175-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]