RnoEX0059004 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37667638-37670036:-
Coord C1 exon
chr3:37669944-37670036
Coord A exon
chr3:37669334-37669426
Coord C2 exon
chr3:37667638-37667730
Length
93 bp
Sequences
Splice sites
3' ss Seq
GATACTTTTTTACCATACAGGTG
3' ss Score
8.46
5' ss Seq
TCGGTACTC
5' ss Score
3.1
Exon sequences
Seq C1 exon
GTGCTATACAAAGAAAACCTGGGGACAGGAATTCCCATCCCCATCACTCCAGAGATGCAGAGAGTAAAACTCAATCAAGAAAACCTTAGCTCG
Seq A exon
GTGCTATATAAAGAAAACATGGGCAAGGGAACCCCTTTACCTGTCACTCCAGAGATGGAGAGAGTCAAACACAATCAAGAAAATATTAGCTCG
Seq C2 exon
GTTTTGTACAAAGAAAATGTGGGTAAAGCCACCCCAACCCCTGTCACTCCAGAGATGCAGAGAGTCAAACGCAATCAAGAAAACATTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'157-168,'157-167,158-168
Average complexity
C3
Mappability confidence:
75%=50=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
PF0088013=Nebulin=PD(35.7=32.3),PF0088013=Nebulin=PU(57.1=51.6)
C2:
PF0088013=Nebulin=PD(35.7=32.3),PF0088013=Nebulin=PU(55.2=51.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATACAAAGAAAACCTGGGGACA
R:
TGATTGCGTTTGACTCTCTGCA
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]