MmuEX0031334 @ mm10
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52150967-52153148:-
Coord C1 exon
chr2:52153056-52153148
Coord A exon
chr2:52151364-52151456
Coord C2 exon
chr2:52150967-52151059
Length
93 bp
Sequences
Splice sites
3' ss Seq
GATCCACTGGACTCATTTAGGTT
3' ss Score
4.67
5' ss Seq
TCGGTATTG
5' ss Score
3.83
Exon sequences
Seq C1 exon
GTGCTATACAAAGAGAACATGGGCAAGGGAACCCCTTTACCTGTCACTCCAGAGATGGAGAGAGTCAAACACAATCAAGAAAATATTAGCTCG
Seq A exon
GTTTTGTACAAAGAAAATGTGGGGAAAGCCACCCCAACCCCTGTCACTCCAGAGATGCAGAGAGTCAAACGCAATCAAGAAAACATTAGCTCG
Seq C2 exon
GTGCTATACAAAGAGAACATGGGGAAAGCAACCCCCACACCCTTCACTCCTGAGATGGAAAGAGTCAAACGCAATCAAGAAAACTTTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'172-183,'172-182,173-183
Average complexity
C3
Mappability confidence:
62%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.936 C2=0.968
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(35.7=32.3),PF0088013=Nebulin=PU(57.1=51.6)
A:
PF0088013=Nebulin=PD(35.7=32.3),PF0088013=Nebulin=PU(57.1=51.6)
C2:
PF0088013=Nebulin=PD(35.7=32.3),PF0088013=Nebulin=PU(55.2=51.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAACATGGGCAAGGGAAC
R:
CGAGCTAAAGTTTTCTTGATTGCGT
Band lengths:
175-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types