DreEX0049986 @ danRer10
Exon Skipping
Gene
ENSDARG00000032630 | neb
Description
nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
Coordinates
chr9:23003192-23005063:-
Coord C1 exon
chr9:23004963-23005063
Coord A exon
chr9:23004469-23004561
Coord C2 exon
chr9:23003192-23003248
Length
93 bp
Sequences
Splice sites
3' ss Seq
GGACCTGAAATGTGTATTAGATT
3' ss Score
2.55
5' ss Seq
TTGGTAGTG
5' ss Score
-1.33
Exon sequences
Seq C1 exon
TCCTGAAGATCCAGTACAAAGAGGAGCTGGGGCAAGGGACAGCCATATCTGAAACCCCAGAGATGGAGAGGGTTAAACGCAATCAGGAGGCTATTAGCACG
Seq A exon
ATTAAATACAAGGATTCATTAAGTCAAGGCATTTCTATACCTGACCTTCCTGAGGTGAAGCGGGTTCGGGAAACCCAGAAGAACATCAGCTTG
Seq C2 exon
ATTCATTACAAAGAAGATTTGGGAGGAGGAACGGCTATTTCAGAAACCCCAGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032630-'143-153,'143-152,144-153
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.031 C2=0.197
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0088013=Nebulin=PD(32.0=40.0)
Main Inclusion Isoform:
ENSDART00000143888fB4192
Main Skipping Isoform:
ENSDART00000143888fB4198
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGATCCAGTACAAAGAGGAGC
R:
CTGGGGTTTCTGAAATAGCCGT
Band lengths:
151-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]