BtaEX0024156 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44742495-44744389:+
Coord C1 exon
chr2:44742495-44742587
Coord A exon
chr2:44743510-44743602
Coord C2 exon
chr2:44744120-44744389
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTGGATACTTTATCACACAGGTG
3' ss Score
6.19
5' ss Seq
TCGGTATTT
5' ss Score
4.52
Exon sequences
Seq C1 exon
GTGTTATACAAAGAAAACATCGGGAAAGGGATTCCAATTCCCATCACTCCAGAGATGGAGAGAGTCAAACACAATCAAGAAAACTTTAGTTCG
Seq A exon
GTGCTATACAAAGAAAACCTGGGCACAGGAATCCCCGTCTCCACCACTCCAGAAATGCAGAGAGTCAAACTCAATCAAGAGAATCTTAGCTCG
Seq C2 exon
GTGTTATACAAAGAAAACATGGGCAAGGGAACCCCTTTACCTGTCACTCCAGAGATGGAGAGAATCAAACACAATCAAGAAAATATTAGCTCGGTACTTGCGGCAAGACAAAAAAAAAAAAAAAAAAAAAAACCTACTTCTTTAATAATTTAAAATAATACATATTAATCCTACTTTTTAAAGATAACTGAAATTTTGTGAATTTCTTAATCACATTTATCCTTCTTCCTTCTTTAGGGCTACTCCTGGACTTAACCTCAGAATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907-'168-174,'168-173,169-174
Average complexity
S
Mappability confidence:
62%=50=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATTCCAATTCCCATCACTCC
R:
GCCGCAAGTACCGAGCTAATA
Band lengths:
170-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development