RnoEX0059002 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37675166-37678370:-
Coord C1 exon
chr3:37678278-37678370
Coord A exon
chr3:37677128-37677220
Coord C2 exon
chr3:37675166-37675258
Length
93 bp
Sequences
Splice sites
3' ss Seq
GTGTCCCCATTTCCATGTAGGTC
3' ss Score
9.15
5' ss Seq
TCGGTACTG
5' ss Score
4.52
Exon sequences
Seq C1 exon
GTTTTATATAAAGAGGATGTGTCCCCGGGAACAGCAATCGGAAAGACTCCGGAGATGCTCAGGGTGAAGCAAACTCAGGACCACATTAGCTCG
Seq A exon
GTCAAGTATAAAGAAGCAATTGGACAAGGAACTCCCATCCCTGACCTGCCCGAAGTGAAGCGCGTCAAGGAGACCCAGAAGCACATTAGCTCG
Seq C2 exon
GTTATGTACAAAGAAAACCTGGGAACAGGCATCCCAACCACTGTCACCCCAGAGATTGAGAGAGTCAAACGCAATCAAGAGAACTTTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'150-162,'150-161,151-162
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=0.774 C2=0.774
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(25.0=19.4),PF0088013=Nebulin=PU(61.5=51.6)
A:
PF0088013=Nebulin=PD(30.8=25.8),PF0088013=Nebulin=PU(64.0=51.6)
C2:
PF0088013=Nebulin=PD(28.0=22.6),PF0088013=Nebulin=PU(57.1=51.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGAGGATGTGTCCCCGGG
R:
CGAGCTAAAGTTCTCTTGATTGCG
Band lengths:
178-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]