BtaEX6009781 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44735954-44739173:+
Coord C1 exon
chr2:44735954-44736046
Coord A exon
chr2:44737150-44737242
Coord C2 exon
chr2:44739081-44739173
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCCAATTTTTATACCTGCAGGTG
3' ss Score
10.1
5' ss Seq
TCGGTAACG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GTTTTATATAAAGAGGATGTCTCACCAGGAACAGCAATTGGAAAGACACCTGAGATGATGAGAGTGAAGCAAACCCAGGACCACATTAGCTCG
Seq A exon
GTGAAGTATAAGGAGGTGATTGGACAAGGAACGCCCATCCCAGACCTGCCTGAAGTGAAGCGGGTCAAGCAGACACAGAAGCACATCAGCTCG
Seq C2 exon
GTTATGTACAAAGAGAACCTGGGAACAGGCATTCCAACCCCTGTCACTCCAGAGATTGAGAGAGTCAAACGCAATCAAGAGAACTTTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907-'162-169,'162-167,163-169=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=0.548 C2=0.839
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(25.0=19.4),PF0088013=Nebulin=PU(69.6=51.6)
A:
PF0088013=Nebulin=PD(21.7=16.1),PF0088013=Nebulin=PU(64.0=51.6)
C2:
PF0088013=Nebulin=PD(28.0=22.6),PF0088013=Nebulin=PU(57.1=51.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGTCTCACCAGGAACAGC
R:
CGAGCTAAAGTTCTCTTGATTGCG
Band lengths:
172-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]