GgaEX1002805 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34679907-34693482:-
Coord C1 exon
chr7:34693390-34693482
Coord A exon
chr7:34691191-34691283
Coord C2 exon
chr7:34679907-34679999
Length
93 bp
Sequences
Splice sites
3' ss Seq
TAATGTCTGTGCCTTTGTAGATT
3' ss Score
8.66
5' ss Seq
TCGGTAGTG
5' ss Score
1.01
Exon sequences
Seq C1 exon
ATTTTGTATAAAGAAGATATTGGAACTGGAACTACTATTGAAAAGACGCCAGAGATGCAGAGAGTTAAAAGAACCCAGGATGCAATTAGCTCG
Seq A exon
ATTAAATACAAGGAGAGCATTGGAAAAGGAACTCCAATTCCTGATCTCCCAGAAGTGAAACGTGTCAAGGAGACGCAGAAGCACATCAGCTCG
Seq C2 exon
GTTTTGTACAAAGAAAATGTGGGGAAAGTGACCCCAACACCCATCACTCCAGAGATGGAGAGAGTCAAACGCAATCAAGAGATCATTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495_MULTIEX1-25/33=24-31
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.645 A=0.631 C2=0.530
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(25.0=19.4),PF0088013=Nebulin=PU(59.3=51.6)
A:
PF0088013=Nebulin=PD(33.3=29.0),PF0088013=Nebulin=PU(57.1=51.6)
C2:
PF0088013=Nebulin=PD(33.3=29.0),PF0088013=Nebulin=PU(57.1=51.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGATATTGGAACTGGAACTACT
R:
CGAGCTAATGATCTCTTGATTGCG
Band lengths:
175-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]