MmuEX1018334 @ mm10
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52157832-52160748:-
Coord C1 exon
chr2:52160656-52160748
Coord A exon
chr2:52159477-52159569
Coord C2 exon
chr2:52157832-52157924
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTGTCCCCATCTCCATGTAGGTC
3' ss Score
10.65
5' ss Seq
TCGGTACTG
5' ss Score
4.52
Exon sequences
Seq C1 exon
GTTTTATATAAAGAGGATGTATCCCCGGGGACGGCAATTGGAAAGACGCCTGAGATGCTCAGAGTGAAGCAAACGCAGGACCACATTAGCTCG
Seq A exon
GTCAAGTATAAAGAAGCAATCGGACAAGGAACTCCGATCCCTGACCTGCCCGAAGTGAAACGCGTCAAGGAGACCCAGAAGCACATTAGCTCG
Seq C2 exon
GTTATGTACAAAGAAAACCCGGGAACAGGCATCCCGACCACTGTCACTCCAGAGATTGAGAGAGTCAAACGCAACCAAGAGAACTTTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'164-175,'164-173,165-175
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=0.848 C2=0.849
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(25.0=19.4),PF0088013=Nebulin=PU(61.5=51.6)
A:
PF0088013=Nebulin=PD(30.8=25.8),PF0088013=Nebulin=PU(66.7=51.6)
C2:
PF0088013=Nebulin=PD(25.0=19.4),PF0088013=Nebulin=PU(57.1=51.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGACGGCAATTGGAAAGAC
R:
GAGCTAAAGTTCTCTTGGTTGCG
Band lengths:
159-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types