MmuALTA0012426-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000001855 | Nup214
Description
nucleoporin 214 [Source:MGI Symbol;Acc:MGI:1095411]
Coordinates
chr2:31893622-31894996:+
Coord C1 exon
chr2:31893622-31893692
Coord A exon
chr2:31894840-31894842
Coord C2 exon
chr2:31894843-31894996
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CCCCCACTTGTTTTTTTCAGCAG
3' ss Score
8.58
Exon sequences
Seq C1 exon
GTTTTGGGTCTAGTAATACTGGTTCTGTGTTTGGCCAGGCAGCCAACACTGGTGGGTCAGTCTTTGGCCAG
Seq A exon
CAG
Seq C2 exon
TCATCCACTTCCAGTGGTGGCGTGTTTGGGTCTGGAAATGCTACAAGAGGGGGCGGTTTCTTCAGTGGCCTTGGAGGAAAACCCAGCCAGGATGCTGCCAACAAAAACCCCTTCAGCTCAGCCGGTGGGGGCTTTGGATCTACAGCTGCCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001855-42-47,42-46-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.236 A=NA C2=0.688
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGTTCTGTGTTTGGCCAG
R:
GCCCCCTCTTGTAGCATTTCC
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: