BtaALTA0020631-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000021896 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr11:101410070-101425510:+
Coord C1 exon
chr11:101410070-101410140
Coord A exon
chr11:101425354-101425356
Coord C2 exon
chr11:101425357-101425510
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
CTGTCCCTTTTGTCTTCCAGCAG
3' ss Score
10.22
Exon sequences
Seq C1 exon
GTTTTGGGTCTAGTAATACTGGTTCTTTGTTTGGTCAAGCAGCCAGTACCAGTGGAACAGTCTTTGGCCAG
Seq A exon
CAG
Seq C2 exon
TCGTCCTCTTCCAGCGGCAGCGTGTTTGGGTCTGGAAACGCTGGAAGAGGGGGAGGCTTCTTCAGCGGCCTCGGAGGAAAACCCAGCCAGGATGCAGCCAACAAAAACCCGTTCAGCTCGGCCAGCGGGGGCTTTGGGTCCACAGCTACCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021896-37-37,37-36-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.528
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTTGGTCAAGCAGCCAGT
R:
CTCTTCCAGCGTTTCCAGACC
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development