GgaALTA0001906-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000003830 | NUP214
Description
NA
Coordinates
chr17:6743023-6743796:+
Coord C1 exon
chr17:6743023-6743134
Coord A exon
chr17:6743640-6743642
Coord C2 exon
chr17:6743643-6743796
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
TTGCCCTTCTTGTGTCCTAGCAG
3' ss Score
7.55
Exon sequences
Seq C1 exon
TAATAGTCCTGATGATTTATTTTCCTTTCTTTTCTTGGCAGGTTTTGGTTCTAGCAACACAGGTTCTGTGTTTGGGCAAGCAGCAAATACTGGAGGCATTGTCTTTGGGCAG
Seq A exon
CAG
Seq C2 exon
TCGTCATCTTCCACTGGAGGCCTCTTTGGATCTGGAAGTGGTGGGAGAGGTGGAGGCTTCTTCACTGGTTTGGGAGGAAAGCCAAGTCAGGATGCAGCCAATAAGAATCCTTTTGGTTCCTCCAGTGGAGGATTTGGATCGGCAGCTTCCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003830-53-60,53-59-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.340
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGTTCTGTGTTTGGGCAA
R:
CCTCTCCCACCACTTCCAGAT
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]