MmuINT0151713 @ mm9
Intron Retention
Gene
ENSMUSG00000057738 | Spna2
Description
spectrin alpha 2 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:29862143-29863105:+
Coord C1 exon
chr2:29862143-29862190
Coord A exon
chr2:29862191-29863013
Coord C2 exon
chr2:29863014-29863105
Length
823 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ACATTATCATTCTCCTGTAGGAG
3' ss Score
9.47
Exon sequences
Seq C1 exon
TCTGCTCGACTGATGGTCCATACAGTGGCTACCTTCAACTCCATCAAG
Seq A exon
GTAAGAAGTGGTGACCAGCTATCCTGCTTATCCTTGCTCTTCTTTACTATCTTTCTTACTTGACAACAGTAGGGGCTTGTCCTCGTGCTGGAGCATGCTGTGACCAGGCCTACTTAAGTTTCTTGATCTAGACTCCAACCTGAGTATGTCTTTACTTTTTTTTTTCTATTGCTATGACAAAACACTATGGCCAAGGCAATTTATAAAATAAAGTGTTTAATTAGGCTTATGATTTCAGGATAGAGTCCATGATGGCATGGCAGCAGGAATAGTTAAGACTCTCATACAAACAGGAGGCAGAGAGAATACATAGAGAATGGCCAGTCTTTTGACACCTCAAAGCCTGTACATCTTCCCCAACAGAGCCTGTTCCTTCCCAAACATCCAAAGGGGACCAAGTATTCAAACATGAGCCTATGGGAGTCATTCTCACTCAGACCAGCACAGAGCAGGCCTGAAAACCTTCGCTGGGATTTCCAGTGGAATAGGAACCTTACCCAGTTGTGCTCTGGTCCAAGACTTCATTGGTTGTCGTACTGAGAGAAGATTCTCAGAAGTCTCCATTTGGCAGTTACTTGTAGACACCATATGCCCAGCACCAAAGCTAGCTTATCCAGTGTTGCAAATGTTTCTAAGTCAGGCTTTTTGGGGGTTTGGAGGTTATTAGATATGACTTTATTTGCTCTTCAAAAGATCTCTGTTGTGGTACGCTGCTGTTTGCAAGACAATGAAAAATTACAGGCAAAAAAATTATTTTCCCAAGGTCTGGTTGTGGGTGTGGCAGACAGGTTAGAAGAGAACTGACATTATCATTCTCCTGTAG
Seq C2 exon
GAGCTGAATGAGCGTTGGCGGTCCCTGCAACAGCTGGCTGAGGAACGTAGCCAGCTCTTGGGCAGTGCACACGAAGTACAGAGGTTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738-Spna2:NM_001076554:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.290
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043516=Spectrin=PU(6.7=22.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: