DreINT0155178 @ danRer10
Intron Retention
Gene
ENSDARG00000019231 | spna2
Description
spectrin alpha 2 [Source:ZFIN;Acc:ZDB-GENE-051113-60]
Coordinates
chr21:13087349-13089267:+
Coord C1 exon
chr21:13087349-13087396
Coord A exon
chr21:13087397-13089175
Coord C2 exon
chr21:13089176-13089267
Length
1779 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GCTTTTGCGTTTGCATGTAGGAG
3' ss Score
6.62
Exon sequences
Seq C1 exon
TCTGTTCGCTTGGCTGTTCAAACAACGGCCAACTTTAATACTATCAAG
Seq A exon
GTAAGATTCTAGGATCTTCGTATCCGTCTTTAGACCTTCCCTCAACCCAACCCACTAAATCCTGCATTGTGCCTTTTGTACCTGGAGGACTAACTCATCGTGGTGTTCTTGTATTGGGGTTCCCTGTGTCCCATCACTGAACCATCGGCTGTGCAGTTGCATCCGCTTTATTTCCATTCACAAGTCCTTGTTGAGCATTTGAATTAACTCCTTTGTGTCTTGATGTTTTGGTGGTGGTCAAACAGAAATTCCAGAATGCATTATTTAACGCTTCTTTTTCAGTTTATGGCCGATGCATCCACCAACGATTTTATTTTGTCTAACTTTCATCACTCATCCCACATGCTTAAATGTTGTAGACGTTCTGTTTGTGTTGCTTATTTAGGGCTGGGTGGTATGACCAAAGTTCTACTTTACGGTGTTAGTCATCTGATTTTAAGGGATATTTTTATGTTGTATTTACCTAATTGGGTTGTTAAATCTTAGAAAAGCAACAAAAAGAGCAATAATAATAAATAAACATTAATAATTCAGAATGGAAAGAATGTTTTTTTTTTTCTTAAATTTTGACCTTCTTATATAGGCAAATGTTTTATACTATTAAAACTATAAAATATGGTATTTTTGCCAATATTAAAAAACTCTCTTTATCTGAGCTAATGCCGATTATATTTTCTGATTGTGTTTTTCAGAAGTGGTAATTTACAAGCTCAGGTTTGAGATTTTTTTTTATTCCCTGTATGTGAAATGCCTTTACAGCTCCGGCTGCAAGAGCATCAAAAGTCGCGACATTGATCTCATATTTAAAAGGGCCATTGCAGCATATCAGCAAATTACTTACATTCCCGCATAAAAACATGCCTTTTAGTGTGAAAATGTTCCAAGCTTTTTAGAGCTGCACAATTAATCGAAAAAAGATCTTGATTCGACCCCCCTAGACGATCTTAATCCAGCATTTCTATGATTCTGCCAATCATATTTTAAGGAGCAAAGGCAGCTGCACAAGTCTTCACACTGTTTTACATACGTTGCTCTTTGCAACGTGGACACCTCTAAATGGTGTTGAAAGAGTCACATACTGTTTATCAGCAATAATTCACCCAAAAATGTAATTTGTGTCTTCATATTCCCTGACAAACATATCAAACAAGACTAAACAATTCATGATATAACTTAAAATTGTGTATTTGTACTTTAATTTTTCTAGCCTAATGTGAATCGGTCATGTTATCAGTCATGCATTAGGACCTGGGGGAAAGTGTTAGTCGGCAGAGGCTGAGGCACTATAAAATTGACTGTTTAACTTGCAGAGCAATATTGCACACAGAGTTATTCTGTACTCGCGTTCGCAGGTACAAGTCTAATCAAATAGTTACTCTAGATCACTTTGAGTTCTCCAACCAACGCTTCCCTTAGTCTCATAAGCAGCATCTTCCACGTGAGTTAGCCACACCCACTTCATATAACAGTATATTAGAAAAAATTAATTACAGTTTAAAATTTATTCCACTGTAGCGATTATATACCGTCACACCTCCCAGCCCTACACTCGTTCATACTTTAGTTCTTTCTGCTGGTATGAAGAGCAAAGTATGACGCAAATGATTTAGAAACATTTCTGTAGTGCTTTAGAATAATGTATTGGCTGTATGTTGCTAAACGTGGTTTGCTTGTTTTATCACTCAAGGCGTGGCTTCATGGAGGCAAATCTGCAGTCAGAAACCATGCCAAAAATATGACATATAATCTGGGTATTAATGCTTTTGCGTTTGCATGTAG
Seq C2 exon
GAGCTGAACAACCGCTGGAGGTCTCTGCAGCAGCTGGCTGAAGACCGAAGCAACATGCTGGGCAGTGCTCACGAAGTTCAGAGGTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019231:ENSDART00000102251:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.516
Domain overlap (PFAM):
C1:
PF0039314=6PGD=FE(12.9=100),PF097304=BicD=PU(8.8=81.2),PF0043516=Spectrin=PU(32.4=68.8)
A:
NA
C2:
PF0039314=6PGD=FE(25.9=100),PF097304=BicD=FE(20.3=100),PF0043516=Spectrin=PD(61.8=67.7),PF0043516=Spectrin=PU(6.7=22.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]