GgaINT0124370 @ galGal3
Intron Retention
Gene
ENSGALG00000004719 | SPTAN1
Description
NA
Coordinates
chr17:5794221-5795008:+
Coord C1 exon
chr17:5794221-5794268
Coord A exon
chr17:5794269-5794916
Coord C2 exon
chr17:5794917-5795008
Length
648 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
ATTTTTTGTTGTTGTCCCAGGAA
3' ss Score
7.78
Exon sequences
Seq C1 exon
TCTGCACGTATGATGGTACACACAGTGGCAACGTTTAACTCAATCAAG
Seq A exon
GTAACAGTACAGCTTTTCCTGCCCTTACATAAAAGCTGGGAACTATTTCACCTTCCTTTCCATAGCCTTTTTCTGTCACTATGTTTTATAAGCCATTTTGAATAAACTTATCGAGAGAATTGTTTAACAAATAGCATTTCCTTCTCAAGTTACATCAGAATCTTCTTATATACATGGAATTATTTATTCTTCCATGTCAGGAGAAGCCTTTAAAATTATTCTTCTGATCTAGACTAATTGAATTTGTACTCCCTTTGGACTTAAGCAGAAACAGTGACCTTCACCTTCAGTGAAAGTCCACTCTTGACCTCTCATTTGATATTGACTACTTGGTAAAAATCGCTTGCATTCTCTGAGTAATACAGGTGTTATCAGATACCTTCCAGCACTACTGTCAGCTTTCTCAGTAGAATTGTGAAAAATTGCCTATGAGGATATGGACATGGAGAAGGCATAGCTGGCATGTTCACAAATGTCAGCAGAATGAGAAAGAGGTTTATAAGCCTGGTGAACAAAACTTGCTGGATACTAAGTTTTTCTGTTTGTCATAAAGCTTCAGTGCCATACAAGAGTTTCTTTATGCAGAAATGCTGTAGAACGGTGCTTTGCAGTGTCGGTATGGGGTTTTATTTTTTGTTGTTGTCCCAG
Seq C2 exon
GAACTGAATGAACGCTGGAGATCCCTGCAGCAGTTGGCAGAGGAGCGAAGCCAGCTGTTGGGCAGCGCTCATGAAGTCCAGAGGTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719:ENSGALT00000007516:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.344
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(28.1=56.2)
A:
NA
C2:
PF0043516=Spectrin=PD(65.6=67.7),PF0043516=Spectrin=PU(15.6=22.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]