MmuEX0020817 @ mm9
Exon Skipping
Gene
ENSMUSG00000085141 | Gm13429
Description
predicted gene 13429 [Source:MGI Symbol;Acc:MGI:3651652]
Coordinates
chr2:36064701-36068422:+
Coord C1 exon
chr2:36064701-36064973
Coord A exon
chr2:36066095-36066605
Coord C2 exon
chr2:36068045-36068422
Length
511 bp
Sequences
Splice sites
3' ss Seq
CTGGCTTTCTTTCTCTCTAGGTT
3' ss Score
13.08
5' ss Seq
TAGGTTCGA
5' ss Score
1.12
Exon sequences
Seq C1 exon
GTACAGTCAACGACAGTGGCAAGGCATGTCAGCAAGGCATGGCAGTATGTCAGCAAGGCATGGCAGCTGCTCACATGGCCCCCACAGTCAGGAAGCAGAGAGCAATGCTGCTCCATCCCCATCTCTTCTTCGTACAACCCTTCCCTAGCCATGGGATGCTGCTGCCTACATTTAATCCCACCTCGGTTAACCCAGTCTGCGAGCTCCTTCACAGACATGCCCAGATTTGTCTCCATGGCGATTCCAAGCTGACAGTCAACGTTTACCACCACG
Seq A exon
GTTGCTAGATCAGGTGCCCCAGTTCCCAGTGTCTAGCCAAGGGCTTGGGTTGCTGCAGAGGCCCAAGCTTGTGTTCGCTGAAGCAGCATGGCTGAAGCTCGGGTGCTGTGCAAAAACAGAGCGCTGCTTCCGAAGAGTAGGGCCAGTGCCTGGCACTGCGGGTGCGGGTGCGGGTGCGGGTGCGGGTGCGGGTGCGGGTGCGGGTGCGGGTGCGGGTGCGGGTGCGCTGAGCATCTCGGCAGGGCCTCCCAGAGCACTGCTGCGCGCTGCCTAGCGGGCCGCGGAGGATCCCCCCTGCGGTCTCCCGGGGCGCGACCTCCTGTACCTGCACGGGGGACCCGTTTCCCGGCGGCCGCCGGGCGGCAGGAAGCCGGGCATTGTTCCCTGGCAGAGGCCGGAGGGGAGTTCCCGGTTCGCGCGCACTGGGGAGAAGAGAGCAGCGCCCGCCTGCAACACGCGCTCCGCTGACCCCTGGCATCCGCTCAGCCCTGAAGCTCGCTCATGGATCTAG
Seq C2 exon
GCTCCTGTTTCTGCGGCTTCCTGTTCTACCTGTGTTCTACTGTCTCTGGCCCTGACTTGGGAGCTCCAGGCTGATCTCTGACCTCAGGTTCTGATTGTTGTCTGCCTTGGCTTTCCATTCGACCGACCGACTGTGTGACTCTGGCCAAACCTCTTGCCTTTCCTGAGCCAGCAGGATTCTTCTTCAAACAAGAGCCAACCTGAGAAGCCCAGGATGGATTTGTGACTAGCAAAGGTGGAAGGTGGCAAGGAAGGGGCTGATGCTTGAGTCCCCTGTCCCCTGGTGGTGGCCCTGGACAGTCCTGCAGATCCCTAGTTTTGAAGAACATAGTTTGAAAACCCACTTTCTTGATTTTTTTCCAAAATATTTTTTTCCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000085141_MULTIEX1-3/3=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAACCCAGTCTGCGAGCTC
R:
GACTCAAGCATCAGCCCCTTC
Band lengths:
358-869
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: