MmuEX0020817 @ mm10
Exon Skipping
Gene
ENSMUSG00000085141 | Gm13429
Description
predicted gene 13429 [Source:MGI Symbol;Acc:MGI:3651652]
Coordinates
chr2:36209181-36212903:+
Coord C1 exon
chr2:36209181-36209453
Coord A exon
chr2:36210575-36211085
Coord C2 exon
chr2:36212525-36212903
Length
511 bp
Sequences
Splice sites
3' ss Seq
CTGGCTTTCTTTCTCTCTAGGTT
3' ss Score
13.08
5' ss Seq
TAGGTTCGA
5' ss Score
1.12
Exon sequences
Seq C1 exon
GTACAGTCAACGACAGTGGCAAGGCATGTCAGCAAGGCATGGCAGTATGTCAGCAAGGCATGGCAGCTGCTCACATGGCCCCCACAGTCAGGAAGCAGAGAGCAATGCTGCTCCATCCCCATCTCTTCTTCGTACAACCCTTCCCTAGCCATGGGATGCTGCTGCCTACATTTAATCCCACCTCGGTTAACCCAGTCTGCGAGCTCCTTCACAGACATGCCCAGATTTGTCTCCATGGCGATTCCAAGCTGACAGTCAACGTTTACCACCACG
Seq A exon
GTTGCTAGATCAGGTGCCCCAGTTCCCAGTGTCTAGCCAAGGGCTTGGGTTGCTGCAGAGGCCCAAGCTTGTGTTCGCTGAAGCAGCATGGCTGAAGCTCGGGTGCTGTGCAAAAACAGAGCGCTGCTTCCGAAGAGTAGGGCCAGTGCCTGGCACTGCGGGTGCGGGTGCGGGTGCGGGTGCGGGTGCGGGTGCGGGTGCGGGTGCGGGTGCGGGTGCGGGTGCGCTGAGCATCTCGGCAGGGCCTCCCAGAGCACTGCTGCGCGCTGCCTAGCGGGCCGCGGAGGATCCCCCCTGCGGTCTCCCGGGGCGCGACCTCCTGTACCTGCACGGGGGACCCGTTTCCCGGCGGCCGCCGGGCGGCAGGAAGCCGGGCATTGTTCCCTGGCAGAGGCCGGAGGGGAGTTCCCGGTTCGCGCGCACTGGGGAGAAGAGAGCAGCGCCCGCCTGCAACACGCGCTCCGCTGACCCCTGGCATCCGCTCAGCCCTGAAGCTCGCTCATGGATCTAG
Seq C2 exon
GCTCCTGTTTCTGCGGCTTCCTGTTCTACCTGTGTTCTACTGTCTCTGGCCCTGACTTGGGAGCTCCAGGCTGATCTCTGACCTCAGGTTCTGATTGTTGTCTGCCTTGGCTTTCCATTCGACCGACCGACTGTGTGACTCTGGCCAAACCTCTTGCCTTTCCTGAGCCAGCAGGATTCTTCTTCAAACAAGAGCCAACCTGAGAAGCCCAGGATGGATTTGTGACTAGCAAAGGTGGAAGGTGGCAAGGAAGGGGCTGATGCTTGAGTCCCCTGTCCCCTGGTGGTGGCCCTGGACAGTCCTGCAGATCCCTAGTTTTGAAGAACATAGTTTGAAAACCCACTTTCTTGATTTTTTTCCAAAATATTTTTTTCCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000085141_MULTIEX1-3/3=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAACCCAGTCTGCGAGCTC
R:
GACTCAAGCATCAGCCCCTTC
Band lengths:
358-869
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types