MmuEX0020084 @ mm9
Exon Skipping
Gene
ENSMUSG00000038860 | Garnl3
Description
GTPase activating RANGAP domain-like 3 [Source:MGI Symbol;Acc:MGI:2139309]
Coordinates
chr2:32881600-32886693:-
Coord C1 exon
chr2:32886590-32886693
Coord A exon
chr2:32883769-32883858
Coord C2 exon
chr2:32881600-32881708
Length
90 bp
Sequences
Splice sites
3' ss Seq
TGTGCACTACATGTATGCAGTAC
3' ss Score
1.86
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATAACACCACAGGGATCAACTCAGTCTATACTGTGTACCAAGGGCATGAGGTCATGTTTCACGTTTCCACCATGTTGCCATATTCCAAAGAGAACAGACAGCAG
Seq A exon
TACCCTCAGAGGCAAGAAGAAGGCATGAGATCCCCTGGAACTGAAGCTACAGGCAGTCATGAGCTGCCTGACGTGAGTGCTGCAACCTCA
Seq C2 exon
GTGGAAAGGAAGCGCCACATTGGAAACGATATTGTCACCATCGTGTTCCAGGAAGGAGAGGAGTCCTCTCCCGCCTTTAAGCCTTCCATGATCCGCTCCCATTTTACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038860-'24-23,'24-21,25-23
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=1.000 C2=0.027
Domain overlap (PFAM):
C1:
PF0214510=Rap_GAP=FE(18.1=100)
A:
PF0214510=Rap_GAP=PD(8.8=23.3),PF0214510=Rap_GAP=PU(8.6=36.7)
C2:
PF0214510=Rap_GAP=FE(19.1=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACCAAGGGCATGAGGTCA
R:
AATGGGAGCGGATCATGGAAG
Band lengths:
174-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: