MmuINT0061079 @ mm9
Intron Retention
Gene
ENSMUSG00000026969 | Fam166a
Description
family with sequence similarity 166, member A [Source:MGI Symbol;Acc:MGI:3605773]
Coordinates
chr2:25076322-25076933:+
Coord C1 exon
chr2:25076322-25076448
Coord A exon
chr2:25076449-25076838
Coord C2 exon
chr2:25076839-25076933
Length
390 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TACCATCCACCCATCTCCAGGTT
3' ss Score
8.83
Exon sequences
Seq C1 exon
CTATACCACTGCAGGAGGGATGAGTACCTGCCTCCACACCCCCCACAGGAGACACTAGATGTAGGCAGATTCCAACGACTGCCCCAGCTAGACCACCCCAACCTAATCCAACGCAAGGCCATCTCAG
Seq A exon
GTAAGTGTTGGATATCTGAGCTGTTCCCAAGGGTCCAGACAGAGAACTGAGGGTTTGCTACCTGGGCCCTGTCCTACACAGAAAACAGGTTTCAACTTTTTCTTAAACCAACCCAGTCGTTTCCAAAGAGTTGTTTTTTGAGACAGGGTTTTGTGTAGCCCTGGCTGGCTTGTAACTCCCTCTGTAGACGCTATCCTCAAAACTGCCTATATCCACCTGCCTCTACCTCCTGAGTGATTAAAGGTGTGCACTACCACAGCCTGGCTCAACCTTTAGGTATGTAATGGGCTTAACAGCTGAAATTTCAGGGATAAAGGGGCTCAGCATTTGAAACACCTGGAATCAGTGTAGAAGATATATGCCCTAACCCTACCATCCACCCATCTCCAG
Seq C2 exon
GTTATGCCGGCTTCGTCCCCCGGTTTGCCTGGGTAATGGGGATGAATTACCGTGATGGTGTCACACAAGCTATGGATGACTTTGACAAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026969-Fam166a:NM_026624:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.535 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATACCACTGCAGGAGGGATGA
R:
CTGGTTCTTGTCAAAGTCATCCA
Band lengths:
222-612
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: