HsaINT0060203 @ hg38
Intron Retention
Gene
ENSG00000188163 | FAM166A
Description
family with sequence similarity 166 member A [Source:HGNC Symbol;Acc:HGNC:33818]
Coordinates
chr9:137244642-137245218:-
Coord C1 exon
chr9:137245089-137245218
Coord A exon
chr9:137244737-137245088
Coord C2 exon
chr9:137244642-137244736
Length
352 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GTACATCTGCCTACCCCCAGGCT
3' ss Score
7.64
Exon sequences
Seq C1 exon
CTGTACCACTGCCAGAGGGATGAGTACCCACCCCCCGCCCGCCGCCAGCAGGAGACGCTAGATGTGGGCAGCTTCCAGCGGCTGCCGCAGCTGGACCACCCTAACCTAATCCAACGCAAGGCCATCTCAG
Seq A exon
GTGGGTGTGGGCCTGGGCTGGGCTGGAGAAGGCCGCCCCTCCCCACAAGGTTCTTGCAGTGTGAGAGCCCCTGAGGAGGCTGCCACAGGGGCCCACTTTTCCTGCTCCAGAACAGGCTAGCGGCCTGGGGGGACCTCCTCTGCCTCCCAGCTGCTTCCAGGAGCCCAGCTTTTCCCAAGACGAGGCGGTGCCTTGCCTGCCTGTTCCCATTTGGCCACATCAGACAGTCGCCAACGTTCAGGGAACGAAAGGGAGCCTTGCCTGGCTTCCCTGACACGTCTGAGGGCAGGTGGGTGTGCCCAGGGGAAGGCTAAGGGGGCTTGGGGTAGCCCGTACATCTGCCTACCCCCAG
Seq C2 exon
GCTATGCTGGCTTCATTCCCCGTTTCACCTGGGTAATGGGGTTGAATTACCGAGACGGCGTCATGCAAGCCATGGACGAATTCGACAAGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188163:ENST00000344774:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.610 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCACTGCCAGAGGGATGA
R:
TGGCTCTTGTCGAATTCGTCC
Band lengths:
222-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development