BtaINT0059572 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004095 | FAM166A
Description
family with sequence similarity 166, member A [Source:HGNC Symbol;Acc:HGNC:33818]
Coordinates
chr11:105858822-105859237:+
Coord C1 exon
chr11:105858822-105858948
Coord A exon
chr11:105858949-105859142
Coord C2 exon
chr11:105859143-105859237
Length
194 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
CTGACCTCCTCCTTCCCCAGGTT
3' ss Score
11.5
Exon sequences
Seq C1 exon
CTGTACCACTGCAGGAGGGACGAGTCCCCACCCCTCGCCCACTGGCAGGAGACACTCGACGTGGGCAGGTTCCACAGGCTGCCGCAGCTGGGCCACCCCAAGCTGATCCAGCGCAAGGCCATCTCAG
Seq A exon
GTGCGTGCCCTCCCCACCAAGGCCCCGAGGGCCCGGGGGAGAGCAAGTGAGGAGGCTACCCCTGGGCCCTTCCCAAGGTGGGCACTCTGAGGGCCCATTCCTCTTTAGGAAGGGGGAGGAGACTGCACAGACTGCCCTGACACCCCCAGGGCAAGTGGGGACCTGCAGGGGACACTGACCTCCTCCTTCCCCAG
Seq C2 exon
GTTATGCAGGCTTTGTCCCTCGGTTTGCCTGGGTGATGGGGATGAATTATCGCGATGGGGTCACACAGGCTATGGACGAGTTCGACAAGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004095:ENSBTAT00000005347:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACCACTGCAGGAGGGA
R:
CTGGCTCTTGTCGAACTCGTC
Band lengths:
222-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development