MmuALTD0007826-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000038765 | Lmx1b
Description
LIM homeobox transcription factor 1 beta [Source:MGI Symbol;Acc:MGI:1100513]
Coordinates
chr2:33416485-33420745:-
Coord C1 exon
chr2:33420602-33420745
Coord A exon
NA
Coord C2 exon
chr2:33416485-33420313
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
GTCCCTTCTGCATCCCACAGGGA
3' ss Score
9.83
Exon sequences
Seq C1 exon
AGGTTCTGTCAAGCCGCATGGAGGGCATGATGGCCTCCTACACGCCGCTGGCCCCTCCGCAGCAGCAGATCGTGGCCATGGAGCAGAGCCCCTACGGAAGTAGCGACCCCTTCCAACAGGGCCTCACGCCGCCCCAAATGCCAG
Seq A exon
NA
Seq C2 exon
GGAACGACTCCATCTTCCACGATATCGATAGTGATACCTCCCTCACCAGCCTCAGCGACTGCTTCCTCGGCTCTTCCGACGTGGGCTCCCTGCAGGCCCGCGTGGGGAACCCCATTGACCGGCTCTACTCCATGCAGAGCTCCTACTTTGCCTCCTGAGAGCCAGCCGGGCCGCATGGACGCTTGGGCCTGGGCCTAGGGTGGAGCCACAGGCCTCTGCAGCCAGCCGGCCCCCCAGCCCACCACCCGCTCAGACTCTTCAGACAGCCATACGGTGCCCTCCCCTCGGCCAGCCAGACCTGGCTCAAGTGCCCACCGGGCACAGCCAGGCAAGGCAGATGGGTGCAGCCTGGGCAGGGACTGTGTCCTGCCCACAGAGACCTTGTGACCCCTGGGGACCCAGAGCTCTTGGACAGTCACTTGCCTCCCAGTCCTTTGACTTCATCACTACCTTCCCCGTCCCCGCCTCTTTTTGGGGGAAGCTTAAATTTGTTCGTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038765-8-7,9-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.959 A=NA C2=0.212
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGGAAGTAGCGACCCCTTC
R:
GCTGGTGAGGGAGGTATCACT
Band lengths:
102-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: