MmuEX0044478 @ mm9
Exon Skipping
Gene
ENSMUSG00000027109 | Sp3
Description
trans-acting transcription factor 3 [Source:MGI Symbol;Acc:MGI:1277166]
Coordinates
chr2:72808212-72818503:-
Coord C1 exon
chr2:72818307-72818503
Coord A exon
chr2:72817544-72817689
Coord C2 exon
chr2:72808212-72809571
Length
146 bp
Sequences
Splice sites
3' ss Seq
CCCCCGCGCTGTGCCTGCAGCTC
3' ss Score
10.04
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCCTTTTGGGCTGGAGGCTCCACCTTTTGTGTTTCCCGCACAGTCAATCAAAATAGGAAAAAAAAAATTCCCCGGACCGCTCCGGCCGTGTCCGCCGCCGCTTCCCGCATCCTCTCCCGCCGCCGCCGCCTTCGCTTCTCACCATGTGTAAGGCGGCGGGGAGCCCCGCCTGAGCTGTCCTAAACACACTATGACCG
Seq A exon
CTCCCGAAAAGCCCGTGAAACAAGAGGAAATGGCTGCCTTGGACGTGGACGGCGGCGGAGGCGGCGGCGGCCACGGCGAGTATCTACAGCAGCAGCAGCAGCAACAGCAGCAGCACGGAAACGGCGCGGCGGCGGCGGCGGCCCAG
Seq C2 exon
ACAGGTGATTTGGCTTCTGCACAGTTAGGAGGAGCACCAAACCGATGGGAGGTTTTGTCAGCTACACCTACAACTATAAAAGATGAAGCTGGTAATCTAGTACAGATTCCAGGTGCTGCTACTTCAAGTGGGCAGTATGTCCTTCCCCTTCAGAATTTGCAGAATCAACAAATATTTTCAGTTGCACCAGGATCAGATTCATCAAATGGCACAGTGTCCAATGTTCAGTATCAAGTAATACCACAAATTCAGTCAACAGACGCTCAGCAGGTTCAGATTGGCTTCACAGGCTCCTCAGATAATGGGGGCATAAATCAAGAAAACAGCCAAATTCAGATCATTCCTGGCTCTAATCAAACCTTACTCGCCTCTGGAACACCTCCTGCTAATATCCAGAATCTCATACCACAGACTGGTCAAGTCCAGGTTCAGGGAGTTGCAATTGGTGGCTCATCATTTCCTGGCCAAACTCAAGTAGTCGCTAATGTGCCTCTTGGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027109-'0-7,'0-0,2-7=AN
Average complexity
A_C2
Mappability confidence:
92%=100=90%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.511
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTGAGCTGTCCTAAACAC
R:
TGAACATTGGACACTGTGCCA
Band lengths:
258-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: