HsaEX0061126 @ hg19
Exon Skipping
Gene
ENSG00000172845 | SP3
Description
Sp3 transcription factor [Source:HGNC Symbol;Acc:11208]
Coordinates
chr2:174819601-174830430:-
Coord C1 exon
chr2:174829893-174830430
Coord A exon
chr2:174829133-174829281
Coord C2 exon
chr2:174819601-174820960
Length
149 bp
Sequences
Splice sites
3' ss Seq
CCCCCGCGCTGTGCCTGCAGCTC
3' ss Score
10.04
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TGGCTAGGCCTGCTCCGAGCGCCTGCAAGGTGGAGGAGGCCTGCGCCTCGGGCCTGGCAGCGGCAGCCGGCGAGGGAGGCGGGCACAGCGGGGTAACCGGCGAGCCGTAGCCGCTCTCGAAAACCTACGCTGCCACGGCCGCTCATTGTCTCTCCCCTTCCACCCGGGGGCAAACAGGAAGCGCGCCGCCTGGCAGACCGACGGACAGGCGCCTGGACCAATGAGCACAGCCGACAAAGAGCACGGCGGCGAATGAGAGCCAAGAAGAGGGGCGGGAGTTCCGGGCGGGCTGTCACCCTCTTCCCCCCTTTTGGGCTGGAGGCTCCACCTTTTGTGTTTCCCGCACAGTCAATCAAAATAGGAAAAAAAAATCCCCGGACCGCTCCGGCCGTGTCCGCCGCCGCTTCCCGCATCCTCTCCCGCCGCCGCCGCCTTCGCTCCTCACCATGTGTAAGGCGGCGGGGAGCCCCGCCTGAGGTGCCCTAAACACACTATGACCG
Seq A exon
CTCCCGAAAAGCCCGTGAAACAAGAGGAAATGGCTGCCTTGGACGTGGATAGCGGCGGCGGCGGTGGCGGCGGCGGCGGCCACGGCGAGTATCTGCAGCAGCAGCAACAGCACGGAAACGGTGCGGTGGCGGCGGCAGCGGCGGCCCAG
Seq C2 exon
ACAGGTGATTTGGCTTCTGCACAGTTAGGAGGAGCACCAAACCGATGGGAGGTTTTGTCAGCCACACCTACAACTATAAAAGATGAAGCTGGTAATCTAGTCCAGATTCCAAGTGCTGCTACTTCAAGTGGGCAGTATGTTCTTCCCCTTCAGAATTTGCAGAATCAACAAATATTTTCCGTTGCACCAGGATCAGATTCATCAAATGGTACAGTGTCCAGTGTTCAATATCAAGTGATACCACAGATCCAGTCAGCAGATGGTCAGCAGGTTCAAATTGGTTTCACAGGCTCTTCAGATAATGGGGGTATAAATCAAGAAAGCAGTCAAATTCAGATCATTCCTGGCTCTAATCAAACCTTACTTGCCTCTGGAACACCTTCTGCTAACATCCAGAATCTCATACCACAGACTGGTCAAGTCCAGGTTCAGGGAGTTGCAATTGGTGGTTCATCTTTTCCTGGTCAAACCCAAGTAGTTGCTAATGTGCCTCTTGGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172845_MULTIEX1-1/4=C1-3
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.963 C2=0.490
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTTTTGTGTTTCCCGCAC
R:
AGGTGTGGCTGACAAAACCTC
Band lengths:
244-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)