HsaALTA0008132-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000172845 | SP3
Description
Sp3 transcription factor [Source:HGNC Symbol;Acc:11208]
Coordinates
chr2:174829238-174830430:-
Coord C1 exon
chr2:174829893-174830430
Coord A exon
chr2:174829271-174829281
Coord C2 exon
chr2:174829238-174829270
Length
11 bp
Sequences
Splice sites
5' ss Seq
CCGGTACGT
5' ss Score
10.49
3' ss Seq
CCCCCGCGCTGTGCCTGCAGCTC
3' ss Score
10.04
Exon sequences
Seq C1 exon
TGGCTAGGCCTGCTCCGAGCGCCTGCAAGGTGGAGGAGGCCTGCGCCTCGGGCCTGGCAGCGGCAGCCGGCGAGGGAGGCGGGCACAGCGGGGTAACCGGCGAGCCGTAGCCGCTCTCGAAAACCTACGCTGCCACGGCCGCTCATTGTCTCTCCCCTTCCACCCGGGGGCAAACAGGAAGCGCGCCGCCTGGCAGACCGACGGACAGGCGCCTGGACCAATGAGCACAGCCGACAAAGAGCACGGCGGCGAATGAGAGCCAAGAAGAGGGGCGGGAGTTCCGGGCGGGCTGTCACCCTCTTCCCCCCTTTTGGGCTGGAGGCTCCACCTTTTGTGTTTCCCGCACAGTCAATCAAAATAGGAAAAAAAAATCCCCGGACCGCTCCGGCCGTGTCCGCCGCCGCTTCCCGCATCCTCTCCCGCCGCCGCCGCCTTCGCTCCTCACCATGTGTAAGGCGGCGGGGAGCCCCGCCTGAGGTGCCCTAAACACACTATGACCG
Seq A exon
CTCCCGAAAAG
Seq C2 exon
CCCGTGAAACAAGAGGAAATGGCTGCCTTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172845-1-2,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.963
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTCACCATGTGTAAGGC
R:
CCAAGGCAGCCATTTCCTCTT
Band lengths:
95-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)