MmuALTA1016409-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000027109 | Sp3
Description
trans-acting transcription factor 3 [Source:MGI Symbol;Acc:MGI:1277166]
Coordinates
chr2:72979487-72980446:-
Coord C1 exon
chr2:72980250-72980446
Coord A exon
chr2:72979622-72979632
Coord C2 exon
chr2:72979487-72979621
Length
11 bp
Sequences
Splice sites
5' ss Seq
CCGGTACGT
5' ss Score
10.49
3' ss Seq
CCCCCGCGCTGTGCCTGCAGCTC
3' ss Score
10.04
Exon sequences
Seq C1 exon
CCCTTTTGGGCTGGAGGCTCCACCTTTTGTGTTTCCCGCACAGTCAATCAAAATAGGAAAAAAAAAATTCCCCGGACCGCTCCGGCCGTGTCCGCCGCCGCTTCCCGCATCCTCTCCCGCCGCCGCCGCCTTCGCTTCTCACCATGTGTAAGGCGGCGGGGAGCCCCGCCTGAGCTGTCCTAAACACACTATGACCG
Seq A exon
CTCCCGAAAAG
Seq C2 exon
CCCGTGAAACAAGAGGAAATGGCTGCCTTGGACGTGGACGGCGGCGGAGGCGGCGGCGGCCACGGCGAGTATCTACAGCAGCAGCAGCAGCAACAGCAGCAGCACGGAAACGGCGCGGCGGCGGCGGCGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027109-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCGCTTCTCACCATGTGT
R:
CCAAGGCAGCCATTTCCTCTT
Band lengths:
100-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types