DreEX6034756 @ danRer10
Exon Skipping
Gene
ENSDARG00000001549 | sp3a
Description
sp3a transcription factor [Source:ZFIN;Acc:ZDB-GENE-070410-111]
Coordinates
chr9:2756196-2756961:+
Coord C1 exon
chr9:2756196-2756401
Coord A exon
chr9:2756639-2756712
Coord C2 exon
chr9:2756851-2756961
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTGTTGTGTGTGTGTTTAAGCGC
3' ss Score
8.39
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CCGAGCGACCCTCCAATGAGAGTATAGACGAAGGGCGGGACTTCCTGCTGGTGACGCAGTTGGCGAAGTGGAAGCCCCGCCGTCAATCAAATTAAGAAAAAAACAAACTGGACTAAAGCGAGCGCAAGCAGCGATTAAAACAACCATGTTCGCGGTGTAAAAAAAGCCAACCATCAATCTCCAGGAAAGAGCTCACGTAATGACCG
Seq A exon
CGCCTGAAGGGCCAGTGAAAGCGGGAGTCATGGCGGACAGCAGCAGCGCTCAGGACGGCGGCGGCGCGGAGCAG
Seq C2 exon
GACGGACAGCCCTCGCCGCTCGCCCTGCTCGCCGCCACTTGCACCGGCCTCGGTTCGCCCGCCCCCGGAGCAGAGAACGGGGCCAGCTCTAATAACGCTTCAGCTGGGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001549-'0-3,'0-1,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.982
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCATGTTCGCGGTGTAA
R:
AAGCGTTATTAGAGCTGGCCC
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]