DreEX0074606 @ danRer10
Exon Skipping
Gene
ENSDARG00000007812 | sp3b
Description
Sp3b transcription factor [Source:ZFIN;Acc:ZDB-GENE-110815-3]
Coordinates
chr6:10489091-10493494:-
Coord C1 exon
chr6:10492450-10493494
Coord A exon
chr6:10492051-10492148
Coord C2 exon
chr6:10489091-10490279
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTCTCGCTGTGTCTCCGTAGCCC
3' ss Score
9.97
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
TGTAATACAACATCATTTTATATAACTTTTTAATGTCAACGTGACATTGTGCAAGCACAACCCTGAGTATTTCGCAACACGTCTAGTCTAGCGCTCTCAGCGTAATGGCTACCAGAGTTGCAACTTAACTTCCTGCCATACGTGAACAATTCCTGCAAGATTTCCAAAGACTCTCCGCATACGCGAAGCGCACAACAAACAGGAAACAGTAGTGCCGTGGATTTGACAGACGTGCAGCTGTGACCACTCCACGTCCAGGAGGTCGAATCGCGCAGCCAATCGCGTCCTAGAAGAAAGGCGGGTCTTCCGTTTACGTGACGCAAATTTGACTGGTAATCTCCGAAGCCCCACCTTTTGTGTTTCCCGCACCGTCAATCAAAAATAAGAAAAAAAATCGACCCGAATCTCCGATCACAGCCCGCCTTTGATTAAAACAATCATGTTGGGAGTTTAAATGAACAGATAAACCTCCGATTTTATACCTTTTCACGCTATGACTG
Seq A exon
CCCCAGAACAGCCAGCGAAACAGCAGGAAATGGCTGCCTTGGACGTGGACAGCAGTCAGAGCGACTTTCTGCAGCCGGCCAGCGGCGCCCAGGACCAG
Seq C2 exon
CAGACCACAGACCTCACGGCCATCCAGATGACTGGCTCATCTGATCGCTGGGAGGTGCTGACACCTGTGAGCTCAGTGAAAGGTGAGCCAGCAGTTGTGCATGTACCCAGCGGAGGACTTTTGGGCAGCAATGGGCAATATGTGGTGCCATTACAGACTATGGCAGGGCAGACCCAGCCTGTTTTCGTGACGGCAGGGGTAGATGGCACCGGTGCTAATGGGGTGCAGTACCAGGTCATCCCACAGCTGCAGGGGGCAGATGGGGCATCATTAAGCTATACAGCATCCGCTGCAGATGGAAGCACGCTGGGCACTGACATTGCCATCCTTCCGGATGGAACACAAGGTATTGCCACAGCAACTAATGCAAATGACCTCCAAGGCCTACTGAGCCAAAGTGGGCACGTGCAACAGATACCCACAGTCTCATTGGCCGGCTCAGGGTTTGGCACACAAGGCCAAGTTGTTGCTAATATGGGACTGCCCGGCAACATCACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007812-'3-5,'3-4,7-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.876 C2=0.324
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCACAGCCCGCCTTTGATT
R:
TCACTGAGCTCACAGGTGTCA
Band lengths:
170-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]