MmuEX0038423 @ mm9
Exon Skipping
Gene
ENSMUSG00000035437 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:MGI Symbol;Acc:MGI:2385139]
Coordinates
chr2:37398623-37411318:+
Coord C1 exon
chr2:37398623-37398751
Coord A exon
chr2:37403064-37403350
Coord C2 exon
chr2:37411226-37411318
Length
287 bp
Sequences
Splice sites
3' ss Seq
ACTCTGCTCCTTTACAACAGAAT
3' ss Score
7.59
5' ss Seq
GAGGTACTT
5' ss Score
7.82
Exon sequences
Seq C1 exon
ACTTCCAAGGATGACTTGCTGTTGACAGACTTTGAGGGTGCCTTGAAGTTCTTCAGGGTTCAGCTCCCTAAAAGATACCGCTCAGAAGAAAATGCAAAGAGGCTCATGGAGCTTGCCTGTAACACAAAG
Seq A exon
AATCCTGCTGTGGCTGTGGAGCCTCTGAACCATGTATCTGTGGAAGCCGACATTTCAGGCATGAAATGAGTATAAGAAAAGAAAACAGGAGAGCCAAGCAGTGGTGGTGCAAGCCTTTTAATCTCAGCACTTGGGAGGCAGAAGCGGATGGATTTCTAAGTTCCAGAACAGCCAGGGCTACAAAGAGAAACCCTGTCTTGGAAAAAAAAAAAGAAGATGATCAGCATCTCCATACCAATGCAGTCTTAACCATTTGCTGTTGAAAAAAACCCTTTGCCTTGCAGGAG
Seq C2 exon
ATTAGCCAGAAGAAGCTGAAGAAGTTTGAAAAAGAGTACCATACCATGAGGGAGCAGCAGGCCCAACAGGAAGACCCCATCGAGCGATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035437-'28-32,'28-30,30-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.516
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PD(2.9=14.0)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGACTTGCTGTTGACAGACT
R:
CTCAAATCGCTCGATGGGGTC
Band lengths:
214-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: