Special

MmuALTD0009758-1/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000026790 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:MGI Symbol;Acc:MGI:1098824]
Coordinates
chr2:29748964-29756627:+
Coord C1 exon
chr2:29748964-29749032
Coord A exon
NA
Coord C2 exon
chr2:29756597-29756627
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CTTTCACTCCTTTGCATCAGAAT
3' ss Score
6.75
Exon sequences
Seq C1 exon
AAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTACGGCGGAGTGTCCGGGTGAAAACCAAG
Seq A exon
NA
Seq C2 exon
AATCCACCTCATTGCCTGGAGATCACACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026790-9-25,10-25-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.948 A=NA C2=0.600
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF104734=CENP-F_leu_zip=PU(26.9=43.1),PF0149614=V_ATPase_I=PU(17.3=46.6)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000109386





     
                   









    
Main Skipping Isoform:
ENSMUSP00000109394





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000028128, ENSMUSP00000109392, ENSMUSP00000109393, ENSMUSP00000117628, ENSMUSP00000117887, ENSMUSP00000121207
          









    
Other Skipping Isoforms:
ENSMUSP00000049272, ENSMUSP00000109384, ENSMUSP00000109385, ENSMUSP00000109387, ENSMUSP00000109388, ENSMUSP00000109388f6171A, ENSMUSP00000109391, ENSMUSP00000109395, ENSMUSP00000109396
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr9:131223290-131223291 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr11:99051434-99051502 
ALTERNATIVE
BtaALTD0015291-1/2
(ODF2)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr17:5739991-5739992 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AAATCTCATAAGCGCGGAATGA

				
R: 
GTGGTGTGATCTCCAGGCAAT

				
Band lengths: 
100-157

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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