BtaALTD0015291-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000030567 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr11:99051434-99056055:+
Coord C1 exon
chr11:99051434-99051502
Coord A exon
NA
Coord C2 exon
chr11:99055885-99056055
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
TTCTCCCTCCTCTACATCAGAAT
3' ss Score
6.38
Exon sequences
Seq C1 exon
AAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTGCGGCGGAGTGTCCGGGTGAAAACCAAG
Seq A exon
NA
Seq C2 exon
AATCCACCTCACTGCCTGGAGATCACGCCACCATCTTCAGAAAAGCTGGTCTTTTGCACGCGGTTAAGTGACCTCTCTACAGAAGATGACGACTCCGGCCACTGTAAAATGAACCGTTACGATAAGAAGATTGACAGTTTAATGAACGCGGTTGGTTGTCTCAAGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030567-9-10,10-10-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=NA C2=0.211
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF104734=CENP-F_leu_zip=PU(26.9=43.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGCGCGGAATGAAAGGGG
R:
GAGAGGTCACTTAACCGCGTG
Band lengths:
139-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development