BtaALTD0015291-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000030567 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr11:99051434-99056055:+
Coord C1 exon
chr11:99051434-99051502
Coord A exon
chr11:99051503-99051559
Coord C2 exon
chr11:99055885-99056055
Length
57 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
TTCTCCCTCCTCTACATCAGAAT
3' ss Score
6.38
Exon sequences
Seq C1 exon
AAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTGCGGCGGAGTGTCCGGGTGAAAACCAAG
Seq A exon
GTACCTTGGATGCCCCCTGGAAAATCATCCGCCCGGCATGTGGGATGCAATTGGGAG
Seq C2 exon
AATCCACCTCACTGCCTGGAGATCACGCCACCATCTTCAGAAAAGCTGGTCTTTTGCACGCGGTTAAGTGACCTCTCTACAGAAGATGACGACTCCGGCCACTGTAAAATGAACCGTTACGATAAGAAGATTGACAGTTTAATGAACGCGGTTGGTTGTCTCAAGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030567-9-10,10-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=NA C2=0.211
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF104734=CENP-F_leu_zip=PU(26.9=43.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGCGCGGAATGAAAGGGG
R:
GAGAGGTCACTTAACCGCGTG
Band lengths:
139-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development