MmuALTD0009758-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026790 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:MGI Symbol;Acc:MGI:1098824]
Coordinates
chr2:29893444-29901107:+
Coord C1 exon
chr2:29893444-29893512
Coord A exon
chr2:29893513-29893569
Coord C2 exon
chr2:29901077-29901107
Length
57 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CTTTCACTCCTTTGCATCAGAAT
3' ss Score
6.75
Exon sequences
Seq C1 exon
AAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTACGGCGGAGTGTCCGGGTGAAAACCAAG
Seq A exon
GTACCTTGGATGCCCCCTGGAAAATCATCTGCCCGGCATGTGGGATGCAAGTGGGAG
Seq C2 exon
AATCCACCTCATTGCCTGGAGATCACACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026790-20-27,21-27,22-27-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.954 A=NA C2=0.617
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF104734=CENP-F_leu_zip=PU(27.5=43.9)
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCTCATAAGCGCGGAATGA
R:
GTGGTGTGATCTCCAGGCAAT
Band lengths:
100-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types