GgaALTD1016346-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000004767 | ODF2
Description
outer dense fiber protein 2 [Source:RefSeq peptide;Acc:NP_001012817]
Coordinates
chr17:5114162-5115213:+
Coord C1 exon
chr17:5114162-5114218
Coord A exon
chr17:5114219-5114287
Coord C2 exon
chr17:5115043-5115213
Length
69 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TATTTATTGTTTTTCACTAGGGA
3' ss Score
9.35
Exon sequences
Seq C1 exon
CAAAAGCACAAACAGAAAATGAAAGGGAATACTGTGAACGTGCGCCGAGCAGTCCAG
Seq A exon
GTGAAAACAAAGGCCCCCTGGATGCCCCCAGGAAAAACATCTGTCCTTGATTCCACCTACAAATGGGAG
Seq C2 exon
GGACCAACTCACCGCCTGGAAATTACACCTCCAGAGTCCGAAAAGATGATGTCAGTATTGCGCCTGAGTGATCTCTCTACAGATGAGGAAGATGCAGTTTGCTGCAAAATGAATGAATACGAAAGGAAGATAGATAGCCTGATGAATGTGGTGGGAACACTAAAGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004767-13-7,15-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.474
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGAACGTGCGCCGAG
R:
TTCCCACCACATTCATCAGGC
Band lengths:
183-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]