MmuEX0046235 @ mm9
Exon Skipping
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59450099-59537484:+
Coord C1 exon
chr2:59450099-59450253
Coord A exon
chr2:59484826-59484929
Coord C2 exon
chr2:59537405-59537484
Length
104 bp
Sequences
Splice sites
3' ss Seq
TGTGCTCTTGTTCCTTGCAGGAG
3' ss Score
11.62
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GGGGACGGGCCGGAGCGCTGCCTCCGCGGTGGCAGCTGCGGGAGCCCGGCTCGGGAGCCGCAGGAGCCGCAGCCGCCAAGCGCCCAGCCCTCTGCGCCCTGAGGCTCGGCCCCCGGGGTGGGAACCGCGCCGAAAGCTGGAAACTTTCCTGGCAG
Seq A exon
GAGCTGACTGTTGGGCACAGAGGAAGGACAGGAGAGAGAGCTGAGACATAAGGACCACTGTACCGCGTTTCTTCCTTCCATGAATGAGAAGATACCAGAGATAG
Seq C2 exon
AGACAAAAGACTGTTGAAAATGCTGAAGGCTGTGCTGAAGAAGAGCCGAGAGGGAGGAAAGGGAAGCAAGAAGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168-'0-4,'0-2,4-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCGCGCCGAAAGCTG
R:
CTGCTTCCTTCTTGCTTCCCT
Band lengths:
114-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: